ready for testing with size bead enhancement

Author: jakebeal

template_analysis/LacI-CAGop-Fine.mat

@@ -38,9 +38,9 @@
 colorfiles{3} = [stem0312 'ebfp2_P3.fcs'];
 
 % FSC and SSC channels can be added to be read unprocessed to MEFL
-channels{4} = Channel('FSC-A', 488, 488, 10);
-channels{4} = setPrintName(channels{4}, 'FSC');
-channels{4} = setLineSpec(channels{4}, 'k');
+% channels{4} = Channel('FSC-A', 488, 488, 10);
+% channels{4} = setPrintName(channels{4}, 'FSC');
+% channels{4} = setLineSpec(channels{4}, 'k');
 % If the name is FSC or SSC (or one of those with '-A', '-H', or '-W') it will automatically be unprocessed; otherwise, set it 
 % channels{4} = setIsUnprocessed(channels{4}, true);
 
@@ -56,8 +56,8 @@
 
 % Size bead files are used for processing FSC-A units into um equivalent diameter
 % They are optional, and will not be used if size bead file is not set
-% sizebeadfile = [];
-sizebeadfile = '../example_controls/180614_PPS6K_A02.fcs';
+sizebeadfile = [];
+% sizebeadfile = '../example_controls/180614_PPS6K_A02.fcs';
 
 CM = ColorModel(beadfile, blankfile, channels, colorfiles, colorpairfiles, sizebeadfile);
 CM=set_translation_plot(CM, true);
@@ -79,11 +79,11 @@
 CM=set_translation_channel_min(CM,[2,2,2]);
 
 % Configuration for size beads, if used
-TASBEConfig.set('sizebeads.beadModel','SpheroTech PPS-6K'); % Entry from BeadCatalog.xls matching your beads
+% TASBEConfig.set('sizebeads.beadModel','SpheroTech PPS-6K'); % Entry from BeadCatalog.xls matching your beads
 % Can also set bead channel or batch, if alternatives are available
 % Ignore all size bead data below 10^[rangeMin] as being too "smeared" with noise
-TASBEConfig.set('sizebeads.rangeMin', 2);
-CM=set_um_channel_name(CM, 'FSC-A');
+% TASBEConfig.set('sizebeads.rangeMin', 2);
+% CM=set_um_channel_name(CM, 'FSC-A');
 
 % When dealing with very strong fluorescence, use secondary channel to segment
 % TASBEConfig.set('beads.secondaryBeadChannel','PE-Tx-Red-YG-A');