Consider the addition of TBtypeR subworkflow to facilitate mixed-infection analysis #253
Description
Tracking this possibility here since our deep integration with TBprofiler and use of its intermediate files is quite complicated at the moment, but sometimes users just wish to detect mixed-infections.
This publication seems promising and I'm evaluating this independently https://www.nature.com/articles/s42003-025-07705-9 to see how well it performs.
If the results are good then I intend to add it as an optional subworkflow, similar to TBPROFILER and NTMPROFILER on FASTQ files, without any pre/post-processing of data.
Happy to hear thoughts here.