Small fixes and changes to pre-commit config

Author: amgebauer

.pre-commit-config.yaml

@@ -29,7 +29,7 @@ repos:
     hooks:
       - id: bandit
         name: Run bandit (security linter for python)
-        args: ["-c", "pyproject.toml", "-r", "-ll", "biomesh/", "tests/"]
+        args: ["-c", "pyproject.toml", "-r", "-ll", "src/biomesh/", "tests/"]
         additional_dependencies: ["bandit[toml]"]
   - repo: https://github.com/PyCQA/docformatter
     rev: v1.7.7
@@ -41,7 +41,7 @@ repos:
             "--in-place",
             "--config=./pyproject.toml",
             "-r",
-            "biomesh/",
+            "src/biomesh/",
             "tests/",
           ]
   - repo: https://github.com/econchick/interrogate

requirements-dev.txt

@@ -6,7 +6,7 @@ pytest-cov==4.0.0
 pytest-isort==3.1.0
 pytest-sugar==0.9.6
 black==24.3.0
-pre-commit==3.0.2
+pre-commit==4.3.0
 parameterized==0.8.1
 coverage==5.2.1
 pdoc==14.5.1

src/biomesh/adapt.py

@@ -103,11 +103,7 @@ def lin_to_quad(mesh: meshio.Mesh) -> meshio.Mesh:
         new_cells = []
         cell_type = cellblock.type
 
-        if cell_type in ["vertex"]:
-            # vertices do not need to be converted
-            continue
-
-        if cell_type in ["hexahedron27", "tetra10", "triangle6", "quad9"]:
+        if cell_type in ["vertex", "hexahedron27", "tetra10", "triangle6", "quad9"]:
             # this cell block is already quadratic, no need to convert
             new_cell_blocks.append(cellblock)
             for key, data in mesh.cell_data.items():