remove defined chdir

Author: ucabc46

extra/weak_scaling/kathleen_slurm_copy_states.sh

@@ -5,7 +5,6 @@
 #SBATCH --cpus-per-task=40
 #SBATCH --nodes=16
 #SBATCH --ntasks-per-node=1
-#SBATCH --chdir=/home/ucabc46/ParticleDA.jl
 #SBATCH --output=slurm_log/%x-%j.out
 #SBATCH --error=slurm_log/%x-%j.err
 
@@ -15,8 +14,10 @@ export JULIA_NUM_THREADS=$OMP_NUM_THREADS
 julia --project=. -e 'using Pkg; Pkg.instantiate(); Pkg.precompile()'
 
 PARTICLEDA_TEST_DIR=$HOME/ParticleDA.jl/test
+RESULTS_DIR=$PARTICLEDA_TEST_DIR/output
+mkdir -p $RESULTS_DIR
 JULIA_DIR=$HOME/.julia
 
 $JULIA_DIR/bin/mpiexecjl -n $SLURM_NNODES\
      julia --project=. \
-     $PARTICLEDA_TEST_DIR/mpi_optimized_copy_states.jl -t $PARTICLEDA_TEST_DIR/output/all_timers_$SLURM_NNODES.h5 -o
+     $PARTICLEDA_TEST_DIR/mpi_optimized_copy_states.jl -t $RESULTS_DIR/all_timers_$SLURM_NNODES.h5 -o