v2024.11.27

- fixed plotting the delays for features that were turned off
- removed backward compatibility for features_off property of Config
- add info that features_off must be a list

Author: guillaumelegoc

configs/openfield.py

@@ -11,7 +11,7 @@
 modality : openfield
 features : speed, head angle, body angle, x, y
 author : Guillaume Le Goc (g.legoc@posteo.org), Rémi Proville (Acquineuro)
-version : 2024.11.22
+version : 2024.11.27
 
 """
 
@@ -75,8 +75,8 @@
 }
 # Preset y axes limits
 FEATURES_YLIM = {}  # must be [ymin, ymax], empty {} for automatic
-# Features to NOT plot
-FEATURES_OFF = ("xbody", "ybody")
+# Features to NOT plot (must be a list [])
+FEATURES_OFF = ["xbody", "ybody"]
 
 
 # --- Configuration class

features_from_dlc/features_from_dlc.py

@@ -1598,9 +1598,8 @@ def plot_all_figures(
     figs_features = []
     pbar = tqdm(cfg.features.keys())
     for feature in pbar:
-        if hasattr(cfg, "features_off"):  # for backward compatibility
-            if feature in cfg.features_off:
-                continue
+        if feature in cfg.features_off:
+            continue
 
         pbar.set_description(f"Plotting {feature}")
 
@@ -1682,9 +1681,12 @@ def plot_all_figures(
     fig_delay, axd = plt.subplots(figsize=kwargs_plot["figsize"])
     df_response_plt = df_response[
         df_response["condition"].isin(plot_options["plot_delay_list"])
+        & ~df_response["feature"].isin(cfg.features_off)
     ]
+
     if df_response_plt.empty:
         print("[Warning] Delays are empty, check 'plot_delay_list' in 'plot_options'.")
+
     nice_plot_bars(
         df_response_plt,
         x="feature",

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "features-from-dlc"
-version = "2024.11.22"
+version = "2024.11.27"
 authors = [{ name = "Guillaume Le Goc", email = "g.legoc@posteo.org" }]
 description = "Behavioral quantification from DeepLabCut tracking"
 readme = "README.md"

scripts/ffd_quantify.py

@@ -4,7 +4,7 @@
 Specify each entry, reading carefully what they do, then run the script with the 'ffd'
 conda environment activated.
 
-Works with features_from_dlc v2024.11.22
+Works with features_from_dlc v2024.11.27
 
 """