.github/workflows/r-packages.yml #19
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| name: Build R packages repository | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - main | |
| paths: | |
| - 'r-packages/**' | |
| - '.github/workflows/r-packages.yml' | |
| workflow_dispatch: | |
| jobs: | |
| build-source: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: 'release' | |
| - name: Install system dependencies (macOS) | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install qpdf | |
| brew install --cask basictex | |
| - name: Install system dependencies (Windows) | |
| if: runner.os == 'Windows' | |
| run: | | |
| choco install rtools | |
| - name: Install system dependencies (Linux) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y qpdf texinfo texlive-latex-base texlive-latex-extra \ | |
| libcurl4-openssl-dev libssl-dev libxml2-dev \ | |
| libudunits2-dev libgdal-dev libgeos-dev libproj-dev \ | |
| libfontconfig1-dev libharfbuzz-dev libfribidi-dev | |
| - name: Install R package dependencies | |
| run: | | |
| # First install dependencies that forecast needs | |
| install.packages(c( | |
| "timeDate", | |
| "zoo", | |
| "xts", | |
| "tseries", | |
| "fracdiff" | |
| ), repos="https://cloud.r-project.org", dependencies=TRUE) | |
| # Then try to install forecast | |
| install.packages("forecast", repos="https://cloud.r-project.org", dependencies=TRUE) | |
| # Finally install other needed packages | |
| install.packages(c( | |
| "miniCRAN", | |
| "remotes", | |
| "Rcpp", | |
| "httr", | |
| "memoise", | |
| "foreach", | |
| "snow", | |
| "ggplot2", | |
| "cclust", | |
| "randtoolbox", | |
| "dfoptim", | |
| "doSNOW", | |
| "scoringRules", | |
| "gridExtra", | |
| "reshape2", | |
| "VineCopula", | |
| "jsonlite", | |
| "skimr", | |
| "ranger", | |
| "glmnet", | |
| "xgboost", | |
| "e1071", | |
| "caret", | |
| "R6" | |
| ), repos="https://cloud.r-project.org", dependencies=TRUE) | |
| shell: Rscript {0} | |
| - name: Build source packages | |
| run: | | |
| # Create R script for building packages | |
| cat << 'EOF' > build_packages.R | |
| library(miniCRAN) | |
| # Define directories | |
| repo_dir <- "r-packages" | |
| # Create the repository directories | |
| dir.create(file.path(repo_dir, "src/contrib"), recursive = TRUE, showWarnings = FALSE) | |
| # List of R packages to build | |
| packages <- c( | |
| "ahead", | |
| "bcn", | |
| "crossvalidation", | |
| "ESGtoolkit", | |
| "learningmachine", | |
| "misc", | |
| "mlsauce_r" | |
| ) | |
| # Build and store package source tarballs | |
| message("\nBuilding packages...") | |
| for (pkg_name in packages) { | |
| message(paste("\nBuilding", pkg_name, "...")) | |
| pkg_dir <- file.path(".", pkg_name) | |
| if (dir.exists(pkg_dir)) { | |
| # Run R CMD build | |
| system(paste("R CMD build", pkg_dir)) | |
| # Find the created tarball | |
| pkg_file <- list.files(".", pattern = paste0(basename(pkg_name), ".*\\.tar\\.gz$"), full.names = TRUE) | |
| if (length(pkg_file) > 0) { | |
| # Move the package to the repository directory | |
| file.copy(pkg_file[1], file.path(repo_dir, "src/contrib"), overwrite = TRUE) | |
| file.remove(pkg_file[1]) # Clean up | |
| message(paste("Successfully built and copied:", pkg_name)) | |
| } | |
| } | |
| } | |
| # Create PACKAGES files | |
| tools::write_PACKAGES(file.path(repo_dir, "src/contrib"), type="source") | |
| EOF | |
| # Run the R script | |
| Rscript build_packages.R | |
| build-binaries: | |
| needs: build-source | |
| strategy: | |
| matrix: | |
| os: [windows-latest, macos-latest] | |
| include: | |
| - os: windows-latest | |
| platform: win.binary | |
| path: bin/windows/contrib/4.3 | |
| - os: macos-latest | |
| platform: mac.binary | |
| path: bin/macosx/contrib/4.3 | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: 'release' | |
| - name: Install system dependencies (macOS) | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install qpdf | |
| brew install --cask basictex | |
| - name: Install system dependencies (Windows) | |
| if: runner.os == 'Windows' | |
| run: | | |
| choco install rtools | |
| - name: Install system dependencies (Linux) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y qpdf texinfo texlive-latex-base texlive-latex-extra | |
| - name: Install R package dependencies | |
| run: | | |
| packages <- c( | |
| "Rcpp", "memoise", "foreach", "snow", "forecast", | |
| "ggplot2", "tseries", "cclust", "randtoolbox", | |
| "dfoptim", "doSNOW", "scoringRules", "gridExtra", | |
| "reshape2", "VineCopula", "httr", "jsonlite", | |
| "skimr", "ranger", "glmnet", "xgboost", "e1071", | |
| "caret", "R6" | |
| ) | |
| install.packages(packages, repos="https://cloud.r-project.org", dependencies=TRUE) | |
| # Verify installation | |
| installed <- rownames(installed.packages()) | |
| missing <- packages[!packages %in% installed] | |
| if (length(missing) > 0) { | |
| stop("Missing packages: ", paste(missing, collapse=", ")) | |
| } | |
| shell: Rscript {0} | |
| - name: Build binary packages | |
| run: | | |
| mkdir -p r-packages/${{ matrix.path }} | |
| Get-ChildItem -Path "r-packages" -Directory | | |
| Where-Object { $_.Name -ne "src" -and $_.Name -ne "bin" } | | |
| ForEach-Object { | |
| $pkg = $_.FullName | |
| Start-Process -FilePath "R" -ArgumentList "CMD", "INSTALL", "--build", "$pkg", "--no-multiarch" -NoNewWindow -Wait | |
| } | |
| Move-Item -Path *.zip, *.tgz -Destination r-packages/${{ matrix.path }}/ -ErrorAction SilentlyContinue | |
| shell: pwsh | |
| - name: Create PACKAGES files | |
| run: | | |
| Rscript -e 'tools::write_PACKAGES("r-packages/${{ matrix.path }}", type="${{ matrix.platform }}")' | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: r-packages-${{ matrix.os }} | |
| path: r-packages | |
| deploy: | |
| needs: [build-source, build-binaries] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download all artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: artifacts | |
| - name: Merge repositories | |
| run: | | |
| mkdir -p r-packages-merged | |
| cp -r artifacts/*/* r-packages-merged/ | |
| # Add debug information | |
| echo "Contents of artifacts directory:" | |
| ls -R artifacts/ | |
| echo "Contents of r-packages-merged directory:" | |
| ls -R r-packages-merged/ | |
| - name: Deploy to GitHub Pages | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./r-packages-merged | |
| destination_dir: r-packages |