small edits removing commented code

Author: Morgan Lucy (MLCSU)

.gitignore

@@ -101,17 +101,6 @@ build/
 
 # Specifically allow time_to_event CSV files
 # These are confirmed to be safe to share
-!reference/survival_time_to_event_curves/ttd_cadTx_initialisation.csv
-!reference/survival_time_to_event_curves/ttd_cadTx.csv
-!reference/survival_time_to_event_curves/ttd_hhd_initialisation.csv
-!reference/survival_time_to_event_curves/ttd_hhd.csv
-!reference/survival_time_to_event_curves/ttd_ichd.csv
-!reference/survival_time_to_event_curves/ttd_ichd_initialisation.csv
-!reference/survival_time_to_event_curves/ttd_initialisation.csv
-!reference/survival_time_to_event_curves/ttd_liveTx_initialisation.csv
-!reference/survival_time_to_event_curves/ttd_liveTx.csv
-!reference/survival_time_to_event_curves/ttd_pd_initialisation.csv
-!reference/survival_time_to_event_curves/ttd_pd.csv
 !reference/survival_time_to_event_curves/ttgf_cadTx_initialisation.csv
 !reference/survival_time_to_event_curves/ttgf_cadTx.csv
 !reference/survival_time_to_event_curves/ttgf_liveTx_initialisation.csv
@@ -122,5 +111,3 @@ build/
 !reference/survival_time_to_event_curves/ttma_ichd.csv
 !reference/survival_time_to_event_curves/ttma_pd_initialisation.csv
 !reference/survival_time_to_event_curves/ttma_pd.csv
-!reference/survival_time_to_event_curves/tw_cadTx_England.csv
-!reference/survival_time_to_event_curves/tw_liveTx_England.csv

renal_capacity_model/config_values.py

@@ -376,12 +376,6 @@
     4: [1.31, 762],
     5: [1.23, 619],
     6: [1.02, 385],
-    # 1: [1.02, 1187],
-    # 2: [1.10, 1313],
-    # 3: [1.01, 1537],
-    # 4: [0.98, 2001],
-    # 5: [0.82, 3613],
-    # 6: [0.47, 24639],
 }
 
 tw_liveTx_values = {
@@ -391,12 +385,6 @@
     4: [1.09, 420],
     5: [1.22, 391],
     6: [1.01, 342],
-    # 1: [0.71, 739],
-    # 2: [0.7, 1373],
-    # 3: [0.62, 2814],
-    # 4: [0.54, 7969],
-    # 5: [0.54, 62092],
-    # 6: [0.54, 62092],
 }
 
 tw_cadTx_initialisation_values = {
@@ -406,12 +394,6 @@
     4: [1.26, 1023],
     5: [1.28, 839],
     6: [1.28, 409],
-    # 1: [1.12, 1336, 0.63],
-    # 2: [1.13, 1163, 0.5],
-    # 3: [1.22, 1194, 0.44],
-    # 4: [1.26, 1023, 0.35],
-    # 5: [1.28, 839, 0.18],
-    # 6: [1.28, 409, 0.05],
 }
 
 tw_liveTx_initialisation_values = {
@@ -421,12 +403,6 @@
     4: [1.01, 665],
     5: [1.27, 765],
     6: [1.27, 765],
-    # 1: [0.96, 751, 0.38],
-    # 2: [1.04, 1005, 0.21],
-    # 3: [0.96, 903, 0.14],
-    # 4: [1.01, 665, 0.1],
-    # 5: [1.26, 765, 0.03],
-    # 6: [0, 0, 0.00],
 }
 
 # Time waiting before dialysis

renal_capacity_model/model.py

@@ -780,9 +780,6 @@ def start_transplant(self, patient: Patient) -> Generator:
             if patient.patient_flag == "incident":
                 random_number = truncate_2dp(self.rng.uniform(0, 1))
                 sampled_time = min(
-                    # self.config.time_to_event_curves[f"ttd_inc_received_Tx"].loc[
-                    #    random_number, patient.patient_type
-                    # ]
                     self.config.ttd_krt["incidence"]["received_Tx"][
                         patient.referral_type
                     ][patient.age_group][1]
@@ -803,9 +800,6 @@ def start_transplant(self, patient: Patient) -> Generator:
             else:  # prevalent patient
                 random_number = truncate_2dp(self.rng.uniform(0, 1))
                 sampled_time = min(
-                    # self.config.time_to_event_curves[f"ttd_prev_received_Tx"].loc[
-                    #    random_number, patient.patient_type
-                    # ]
                     self.config.ttd_krt["initialisation"]["received_Tx"][
                         patient.referral_type
                     ][patient.age_group][1]

renal_capacity_model/utils.py

@@ -12,16 +12,6 @@
     "ttma_ichd_initialisation",
     "ttma_pd",
     "ttma_pd_initialisation",
-    # "tw_cadTx_England",
-    # "tw_liveTx_England",
-    # "tw_cadTx_England_initialisation",
-    # "tw_liveTx_England_initialisation",
-    # "ttd_inc_listed",
-    # "ttd_inc_not_listed",
-    # "ttd_inc_received_Tx",
-    # "ttd_prev_listed",
-    # "ttd_prev_not_listed",
-    # "ttd_prev_received_Tx",
 ]