PhylogeneticAnalysis/Tree.hpp at main · TheAmPra/PhylogeneticAnalysis · GitHub

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//
//  Tree.hpp
//  7-25
//
//  Created by Amit Prakash on 7/30/25.
//

// Tree.hpp
// 7-25
// Created by Amit Prakash on 7/30/25.

#ifndef Tree_hpp
#define Tree_hpp
#include <map>
#include <vector>
#include <string>

class Node;

class Tree {
public:
    Tree(void) = delete;
    Tree(int nt, double lambda);
    Tree(std::vector<std::string> TN, double lambda);
    ~Tree(void);

    void initalizeDownPassSequence(void);
    void print(void);
    Node* getRoot(void) { return Root; }
    void simBM(double a, double sig2);
    void exportSpatialGraphCSV(const std::string& nodeFile, const std::string& edgeFile);

private:
    Node* addNode(void);
    void PassDown(Node* p, Node* from);
    void ShowNode(Node* p, int indent);

    std::vector<Node*> DownPassSequence;
    std::vector<Node*> Nodes;
    int NumTaxa;
    Node* Root;
    std::map<int, double> simdata;

};

#endif /* Tree_hpp */