test

Author: kounelisagis

.github/workflows/build-wheels.yml

@@ -23,52 +23,6 @@ env:
   TILEDB_TOKEN: ${{ secrets.TILEDB_TOKEN }}
 
 jobs:
-  build_wheels:
-    name: Wheel ${{ matrix.buildplat[0] }}-${{ matrix.buildplat[1] }}-${{ matrix.python }}
-    runs-on: ${{ matrix.buildplat[0] }}
-    strategy:
-      matrix:
-        buildplat:
-          - [ubuntu-22.04, manylinux_x86_64]
-          - [linux-arm64-ubuntu24, manylinux_aarch64]
-          - [macos-13, macosx_x86_64]
-          - [macos-14, macosx_arm64]
-          - [windows-2022, win_amd64]
-        python: ["cp39", "cp310", "cp311", "cp312", "cp313"]
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: "Brew setup on macOS" # x-ref c8e49ba8f8b9ce
-        if: ${{ startsWith(matrix.buildplat[0], 'macos-') == true }}
-        run: |
-          set -e pipefail
-          brew update
-          brew install automake pkg-config ninja llvm
-
-      - name: Build wheels
-        uses: pypa/[email protected]
-        env:
-          CIBW_BUILD_VERBOSITY: 3
-          CIBW_ENVIRONMENT_PASS_LINUX: SETUPTOOLS_SCM_PRETEND_VERSION_FOR_TILEDB S3_BUCKET TILEDB_TOKEN TILEDB_NAMESPACE
-          CIBW_ENVIRONMENT_MACOS: >
-            CC=clang
-            CXX=clang++
-          MACOSX_DEPLOYMENT_TARGET: "11.0"
-          CIBW_ARCHS: all
-          CIBW_PRERELEASE_PYTHONS: True
-          CIBW_BUILD: ${{ matrix.python }}-${{ matrix.buildplat[1] }}
-          # __init__.py interferes with the tests and is included as local file instead of
-          # used from wheels. To be honest, tests should not be in the source folder at all.
-          CIBW_BEFORE_TEST: rm {project}/tiledb/__init__.py
-        with:
-          output-dir: wheelhouse
-
-      - uses: actions/upload-artifact@v4
-        with:
-          name: cibw-wheels-${{ matrix.buildplat[0] }}-${{ matrix.buildplat[1] }}-${{ matrix.python }}
-          path: "./wheelhouse/*.whl"
-
   build_sdist:
     name: Build source distribution
     runs-on: ubuntu-latest
@@ -96,12 +50,9 @@ jobs:
     strategy:
       matrix:
         os:
-          - macos-13
-          - macos-14
-          - windows-2022
           - ubuntu-22.04
           - linux-arm64-ubuntu24
-        python: ["3.9", "3.10", "3.11", "3.12", "3.13"]
+        python: ["3.12"]
     runs-on: ${{ matrix.os }}
     steps:
       - name: Set up Python ${{ matrix.python }}
@@ -129,37 +80,4 @@ jobs:
           PROJECT_CWD=$PWD
           rm tiledb/__init__.py
           cd ..
-          pytest -vv --showlocals $PROJECT_CWD
-
-      - name: "Re-run tests without pandas"
-        run: |
-          pip uninstall -y pandas
-          pytest -vv --showlocals $PROJECT_CWD
-
-  upload_pypi:
-    needs: [build_wheels, test_sdist]
-    runs-on: ubuntu-latest
-    environment: pypi
-    permissions:
-      id-token: write
-    outputs:
-      package_version: ${{ steps.get_package_version.outputs.package_version }}
-    steps:
-      - uses: actions/download-artifact@v4
-        with:
-          path: dist
-          merge-multiple: true
-
-      - id: get_package_version
-        run: |
-          echo "package_version=$(ls dist/ | head -n 1 | cut -d - -f 2)" >> "$GITHUB_OUTPUT"
-
-      - name: Upload to test-pypi
-        if: inputs.test_pypi
-        uses: pypa/gh-action-pypi-publish@release/v1
-        with:
-          repository-url: https://test.pypi.org/legacy/
-
-      - name: Upload to pypi
-        if: startsWith(github.ref, 'refs/tags/')
-        uses: pypa/gh-action-pypi-publish@release/v1
+          pytest -o log_cli=true --log-cli-level=10 $PROJECT_CWD/tiledb/tests/test_schema_evolution.py -k test_schema_evolution_drop_fixed_attribute_and_add_back_as_var_sized

CMakeLists.txt

@@ -46,9 +46,9 @@ if (NOT TileDB_FOUND)
         message(STATUS "Downloading TileDB default version ...")
         # Download latest release
         fetch_prebuilt_tiledb(
-                VERSION 2.26.2
-                RELLIST_HASH SHA256=86c19d7c5246cb18e370a4272cead63ea84bd651789842e618de4d57d4510522
-        )
+                VERSION 2.27.0.rc5
+                RELLIST_HASH SHA256=143b93bda4beaa241e7b2013336a6f4556a98eb50006135e79860acd11f80f7f
+    )
     endif()
     find_package(TileDB REQUIRED)
     set(TILEDB_DOWNLOADED TRUE)

tiledb/core.cc

@@ -1202,6 +1202,17 @@ class PyQuery {
           now - start_submit;
     }
 
+    for (const auto& bp : buffers_) {
+      py::print("buffer name: ", bp.first);
+      py::print("data: ", bp.second.data);
+      std::cout << "data_type: " << bp.second.type << std::endl;
+      py::print("dtype: ", bp.second.dtype);
+      py::print("offsets: ", bp.second.offsets);
+      py::print("validity: ", bp.second.validity);
+      py::print("isvar: ", bp.second.isvar);
+      py::print("isnullable: ", bp.second.isnullable);
+    }
+
     // update the BufferInfo read-counts to match the query results read
     update_read_elem_num();
 

tiledb/fragment.py

@@ -5,8 +5,6 @@
 import tiledb
 from tiledb.libtiledb import version as libtiledb_version
 
-from .main import PyFragmentInfo
-
 """
 Classes and functions relating to TileDB fragments.
 """
@@ -105,6 +103,8 @@ def __init__(self, array_uri, include_mbrs=False, ctx=None):
 
         self.array_uri = array_uri
 
+        from .main import PyFragmentInfo
+
         fi = PyFragmentInfo(self.array_uri, schema, include_mbrs, ctx)
 
         self.__nums = fi.get_num_fragments()