rename mod header files

zhi-wang · zhi-wang · commit 0b94d6289184 · 2022-10-14T05:14:50.000-05:00
diff --git a/include/ff/cumodamoeba.h b/include/ff/cumodamoeba.h
diff --git a/include/ff/modamoeba.h b/include/ff/modamoeba.h
diff --git a/include/ff/modhippo.h b/include/ff/modhippo.h
diff --git a/src/acc/amoeba/empoleewald.cpp b/src/acc/amoeba/empoleewald.cpp
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/energy.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
diff --git a/src/acc/amoeba/empolenonewald.cpp b/src/acc/amoeba/empolenonewald.cpp
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/energy.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
diff --git a/src/acc/amoeba/epolarewald.cpp b/src/acc/amoeba/epolarewald.cpp
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
diff --git a/src/acc/amoeba/epolarnonewald.cpp b/src/acc/amoeba/epolarnonewald.cpp
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
diff --git a/src/acc/amoeba/fieldewald.cpp b/src/acc/amoeba/fieldewald.cpp
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
diff --git a/src/acc/amoeba/fieldnonewald.cpp b/src/acc/amoeba/fieldnonewald.cpp
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
diff --git a/src/acc/amoeba/induce.cpp b/src/acc/amoeba/induce.cpp
@@ -1,5 +1,5 @@
 #include "ff/amoeba/induce.h"
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
diff --git a/src/acc/amoeba/rotpole.cpp b/src/acc/amoeba/rotpole.cpp
@@ -1,5 +1,5 @@
 #include "seq/rotpole.h"
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "math/libfunc.h"
 
diff --git a/src/acc/amoeba/torque.cpp b/src/acc/amoeba/torque.cpp
@@ -1,5 +1,5 @@
 #include "seq/torque.h"
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "math/libfunc.h"
 #include "seq/add.h"
diff --git a/src/acc/aplus/echgtrn.cpp b/src/acc/aplus/echgtrn.cpp
@@ -1,6 +1,6 @@
 #include "ff/atom.h"
 #include "ff/elec.h"
-#include "ff/hippomod.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
 #include "ff/switch.h"
diff --git a/src/acc/aplus/empole.cpp b/src/acc/aplus/empole.cpp
@@ -1,6 +1,6 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
-#include "ff/hippomod.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
 #include "ff/pme.h"
diff --git a/src/acc/aplus/epolar.cpp b/src/acc/aplus/epolar.cpp
@@ -1,6 +1,6 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
-#include "ff/hippomod.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
 #include "ff/pme.h"
diff --git a/src/acc/aplus/field.cpp b/src/acc/aplus/field.cpp
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
diff --git a/src/acc/aplus/induce.cpp b/src/acc/aplus/induce.cpp
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
diff --git a/src/acc/hippo/cflux.cpp b/src/acc/hippo/cflux.cpp
@@ -1,8 +1,8 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/evalence.h"
 #include "ff/hippo/cflux.h"
-#include "ff/hippomod.h"
+#include "ff/modhippo.h"
 #include "math/libfunc.h"
 #include "seq/add.h"
 #include "tool/darray.h"
diff --git a/src/acc/hippo/echgtrn.cpp b/src/acc/hippo/echgtrn.cpp
@@ -1,6 +1,6 @@
 #include "ff/atom.h"
 #include "ff/elec.h"
-#include "ff/hippomod.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
 #include "ff/switch.h"
diff --git a/src/acc/hippo/empole.cpp b/src/acc/hippo/empole.cpp
@@ -1,6 +1,6 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
-#include "ff/hippomod.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
 #include "ff/pme.h"
diff --git a/src/acc/hippo/epolar.cpp b/src/acc/hippo/epolar.cpp
@@ -1,6 +1,6 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
-#include "ff/hippomod.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
 #include "ff/pme.h"
diff --git a/src/acc/hippo/erepel.cpp b/src/acc/hippo/erepel.cpp
@@ -1,5 +1,5 @@
 #include "ff/hippo/erepel.h"
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
diff --git a/src/acc/hippo/expol.cpp b/src/acc/hippo/expol.cpp
@@ -1,7 +1,7 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/elec.h"
-#include "ff/hippomod.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
 #include "ff/switch.h"
diff --git a/src/acc/hippo/field.cpp b/src/acc/hippo/field.cpp
@@ -1,6 +1,6 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
-#include "ff/hippomod.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
 #include "ff/pme.h"
diff --git a/src/acc/hippo/induce.cpp b/src/acc/hippo/induce.cpp
@@ -1,8 +1,8 @@
 #include "ff/amoeba/induce.h"
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/hippo/induce.h"
-#include "ff/hippomod.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/nblist.h"
 #include "ff/switch.h"
diff --git a/src/acc/osrw.cpp b/src/acc/osrw.cpp
@@ -1,5 +1,5 @@
 #include "md/osrw.h"
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/echarge.h"
 #include "ff/evalence.h"
diff --git a/src/acc/pme.cpp b/src/acc/pme.cpp
@@ -1,5 +1,5 @@
 #include "ff/pme.h"
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/box.h"
 #include "ff/elec.h"
diff --git a/src/amoeba/emplar.cpp b/src/amoeba/emplar.cpp
@@ -1,5 +1,5 @@
 #include "ff/amoeba/empole.h"
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/energy.h"
 #include "math/zero.h"
 #include "tool/externfunc.h"
diff --git a/src/amoeba/empole.cpp b/src/amoeba/empole.cpp
@@ -1,5 +1,5 @@
 #include "ff/amoeba/empole.h"
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/elec.h"
 #include "ff/energy.h"
 #include "ff/hippo/empole.h"
diff --git a/src/amoeba/epolar.cpp b/src/amoeba/epolar.cpp
@@ -1,7 +1,7 @@
 #include "ff/amoeba/epolar.h"
 #include "ff/amoeba/empole.h"
 #include "ff/amoeba/induce.h"
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/hippo/epolar.h"
 #include "ff/elec.h"
 #include "ff/energy.h"
diff --git a/src/amoeba/induce.cpp b/src/amoeba/induce.cpp
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/nblist.h"
 #include "ff/potent.h"
diff --git a/src/amoeba/mpole.cpp b/src/amoeba/mpole.cpp
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/atom.h"
 #include "ff/elec.h"
 #include "ff/pme.h"
diff --git a/src/cu/amoeba/binding.cu b/src/cu/amoeba/binding.cu
@@ -1,5 +1,5 @@
-#include "ff/amoebamod.h"
-#include "ff/cuamoebamod.h"
+#include "ff/modamoeba.h"
+#include "ff/cumodamoeba.h"
 #include "ff/potent.h"
 #include "tool/cudalib.h"
 #include "tool/darray.h"
diff --git a/src/cu/amoeba/emplar.cu b/src/cu/amoeba/emplar.cu
@@ -1,8 +1,8 @@
 #include "ff/amoeba/empole.h"
 #include "ff/amoeba/epolar.h"
 #include "ff/amoeba/induce.h"
-#include "ff/amoebamod.h"
-#include "ff/cuamoebamod.h"
+#include "ff/modamoeba.h"
+#include "ff/cumodamoeba.h"
 #include "ff/elec.h"
 #include "ff/image.h"
 #include "ff/pme.h"
diff --git a/src/cu/amoeba/empole.cu b/src/cu/amoeba/empole.cu
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/image.h"
 #include "ff/pme.h"
 #include "ff/spatial.h"
diff --git a/src/cu/amoeba/epolar.cu b/src/cu/amoeba/epolar.cu
@@ -1,5 +1,5 @@
-#include "ff/amoebamod.h"
-#include "ff/cuamoebamod.h"
+#include "ff/modamoeba.h"
+#include "ff/cumodamoeba.h"
 #include "ff/image.h"
 #include "ff/pme.h"
 #include "ff/spatial.h"
diff --git a/src/cu/amoeba/field.cu b/src/cu/amoeba/field.cu
@@ -1,5 +1,5 @@
-#include "ff/amoebamod.h"
-#include "ff/cuamoebamod.h"
+#include "ff/modamoeba.h"
+#include "ff/cumodamoeba.h"
 #include "ff/image.h"
 #include "ff/pme.h"
 #include "ff/spatial.h"
diff --git a/src/cu/amoeba/pcg.cu b/src/cu/amoeba/pcg.cu
@@ -1,5 +1,5 @@
 #include "ff/amoeba/induce.h"
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/cuinduce.h"
 #include "ff/switch.h"
 #include "seq/launch.h"
diff --git a/src/cu/amoeba/precond.cu b/src/cu/amoeba/precond.cu
@@ -1,5 +1,5 @@
-#include "ff/amoebamod.h"
-#include "ff/cuamoebamod.h"
+#include "ff/modamoeba.h"
+#include "ff/cumodamoeba.h"
 #include "ff/image.h"
 #include "ff/spatial.h"
 #include "ff/switch.h"
diff --git a/src/cu/amoeba/rotpole.cu b/src/cu/amoeba/rotpole.cu
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "seq/launch.h"
 #include "seq/rotpole.h"
 
diff --git a/src/cu/amoeba/torque.cu b/src/cu/amoeba/torque.cu
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "math/libfunc.h"
 #include "seq/add.h"
 #include "seq/launch.h"
diff --git a/src/cu/cumod.cu b/src/cu/cumod.cu
@@ -1,3 +1,3 @@
 #define TINKER_EXTERN_DEFINITION_FILE 1
 
-#include "ff/cuamoebamod.h"
+#include "ff/cumodamoeba.h"
diff --git a/src/cu/diagprecond.cu b/src/cu/diagprecond.cu
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "seq/launch.h"
 
 namespace tinker {
diff --git a/src/cu/epolarrecip.cu b/src/cu/epolarrecip.cu
@@ -1,6 +1,6 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/elec.h"
-#include "ff/hippomod.h"
+#include "ff/modhippo.h"
 #include "ff/pme.h"
 #include "seq/add.h"
 #include "seq/launch.h"
diff --git a/src/cu/hippo/cflux.cu b/src/cu/hippo/cflux.cu
@@ -1,6 +1,6 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/evalence.h"
-#include "ff/hippomod.h"
+#include "ff/modhippo.h"
 #include "math/zero.h"
 #include "seq/add.h"
 #include "seq/launch.h"
diff --git a/src/cu/hippo/echgtrn.cu b/src/cu/hippo/echgtrn.cu
@@ -1,5 +1,5 @@
 #include "ff/elec.h"
-#include "ff/hippomod.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/spatial.h"
 #include "ff/switch.h"
diff --git a/src/cu/hippo/empole.cu b/src/cu/hippo/empole.cu
@@ -1,5 +1,5 @@
-#include "ff/amoebamod.h"
-#include "ff/hippomod.h"
+#include "ff/modamoeba.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/pme.h"
 #include "ff/spatial.h"
diff --git a/src/cu/hippo/epolar.cu b/src/cu/hippo/epolar.cu
@@ -1,5 +1,5 @@
-#include "ff/amoebamod.h"
-#include "ff/hippomod.h"
+#include "ff/modamoeba.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/pme.h"
 #include "ff/spatial.h"
diff --git a/src/cu/hippo/erepel.cu b/src/cu/hippo/erepel.cu
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/hippo/erepel.h"
 #include "ff/image.h"
 #include "ff/spatial.h"
diff --git a/src/cu/hippo/expol.cu b/src/cu/hippo/expol.cu
@@ -1,6 +1,6 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/elec.h"
-#include "ff/hippomod.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/spatial.h"
 #include "ff/switch.h"
@@ -99,7 +99,6 @@ void dexpol_cu(int vers, const real (*uind)[3], grad_prec* depx, grad_prec* depy
 #include "ff/cuinduce.h"
 #include "ff/hippo/expol.h"
 #include "ff/hippo/induce.h"
-#include "ff/hippomod.h"
 #include "tool/error.h"
 #include "tool/ioprint.h"
 #include <tinker/detail/inform.hh>
diff --git a/src/cu/hippo/field.cu b/src/cu/hippo/field.cu
@@ -1,5 +1,5 @@
-#include "ff/amoebamod.h"
-#include "ff/hippomod.h"
+#include "ff/modamoeba.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/pme.h"
 #include "ff/spatial.h"
diff --git a/src/cu/hippo/pcg.cu b/src/cu/hippo/pcg.cu
@@ -1,5 +1,5 @@
 #include "ff/amoeba/induce.h"
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/cuinduce.h"
 #include "ff/hippo/induce.h"
 #include "ff/switch.h"
diff --git a/src/cu/hippo/precond.cu b/src/cu/hippo/precond.cu
@@ -1,5 +1,5 @@
-#include "ff/amoebamod.h"
-#include "ff/hippomod.h"
+#include "ff/modamoeba.h"
+#include "ff/modhippo.h"
 #include "ff/image.h"
 #include "ff/spatial.h"
 #include "ff/switch.h"
diff --git a/src/cu/pme.cu b/src/cu/pme.cu
@@ -1,5 +1,5 @@
 #include "ff/amoeba/empole.h"
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "ff/box.h"
 #include "ff/elec.h"
 #include "ff/pme.h"
diff --git a/src/cu/upredict.cu b/src/cu/upredict.cu
@@ -1,4 +1,4 @@
-#include "ff/amoebamod.h"
+#include "ff/modamoeba.h"
 #include "seq/launch.h"
 
 namespace tinker {
diff --git a/src/elec.cpp b/src/elec.cpp
diff --git a/src/hippo/cflux.cpp b/src/hippo/cflux.cpp
diff --git a/src/hippo/echgtrn.cpp b/src/hippo/echgtrn.cpp
diff --git a/src/hippo/empole.cpp b/src/hippo/empole.cpp
diff --git a/src/hippo/epolar.cpp b/src/hippo/epolar.cpp
diff --git a/src/hippo/erepel.cpp b/src/hippo/erepel.cpp
diff --git a/src/hippo/expol.cpp b/src/hippo/expol.cpp
diff --git a/src/md/osrw.cpp b/src/md/osrw.cpp
diff --git a/src/mdsave.cpp b/src/mdsave.cpp
diff --git a/src/mod.cpp b/src/mod.cpp
diff --git a/src/nblist.cpp b/src/nblist.cpp
diff --git a/src/xanalyze.cpp b/src/xanalyze.cpp
diff --git a/test/aplusliquid.cpp b/test/aplusliquid.cpp
diff --git a/test/chgtrn.cpp b/test/chgtrn.cpp
diff --git a/test/emhippo.cpp b/test/emhippo.cpp
diff --git a/test/ephippo.cpp b/test/ephippo.cpp
diff --git a/test/expol.cpp b/test/expol.cpp
diff --git a/test/localframe.cpp b/test/localframe.cpp
diff --git a/test/localframe3.cpp b/test/localframe3.cpp
diff --git a/test/nacl.cpp b/test/nacl.cpp
diff --git a/test/osrw.cpp b/test/osrw.cpp

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-#include "ff/amoebamod.h"`
	`1`	`+#include "ff/modamoeba.h"`
`2`	`2`	`#include "ff/energy.h"`
`3`	`3`	`#include "ff/image.h"`
`4`	`4`	`#include "ff/nblist.h"`