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comment changes for GitHub release of Tinker 25.5
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0README

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This directory contains a full distribution of the Tinker Molecular
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Modeling package. Source code, extra utility programs and scripts,
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examples, test and benchmark cases are provided. Interfaces to many
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examples, tests and benchmark cases are provided. Interfaces to many
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external packages such as Force Field Explorer (FFE), Tinker-OpenMM,
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APBS, and CHARMM via MSCALE are also available.
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source/baoab.f

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end do
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end if
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c
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c get the frictional and random terms for a BAOAB step
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c get the frictional and random terms for the next step
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c
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egdt = exp(-friction*dt)
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do i = 1, nuse

source/ielscf.f

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c
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c
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c nfree_aux total degrees of freedom for auxiliary dipoles
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c tautemp_aux time constant for auliliary Berendsen thermostat
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c tautemp_aux time constant for auxiliary Berendsen thermostat
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c kelvin_aux target system temperature for auxiliary dipoles
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c uaux auxiliary induced dipole value at each site
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c upaux auxiliary shadow induced dipoles at each site

source/inertia.f

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c
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c literature reference:
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c
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c Herbert Goldstein, "Classical Mechanics, 2nd Edition",
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c Addison-Wesley, Reading, MA, 1980; see the Euler angle
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c xyz convention in Appendix B
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c H. Goldstein, C. Poole and J. Safko, "Classical Mechanics,
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c 3rd Edition", Addison-Wesley, Boston, MA, 2001; see the Euler
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c angle xyz convention in Appendix A
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c
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c
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subroutine inertia (mode)

source/orient.f

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c
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c literature reference:
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c
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c Herbert Goldstein, "Classical Mechanics, 2nd Edition",
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c Addison-Wesley, Reading, MA, 1980; see the Euler angle
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c xyz convention in Appendix B
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c H. Goldstein, C. Poole and J. Safko, "Classical Mechanics,
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c 3rd Edition", Addison-Wesley, Boston, MA, 2001; see the Euler
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c angle xyz convention in Appendix A
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c
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c
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subroutine xyzrigid
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c
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c literature reference:
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c
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c Herbert Goldstein, "Classical Mechanics, 2nd Edition",
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c Addison-Wesley, Reading, MA, 1980; see the Euler angle
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c xyz convention in Appendix B
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c H. Goldstein, C. Poole and J. Safko, "Classical Mechanics,
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c 3rd Edition", Addison-Wesley, Boston, MA, 2001; see the Euler
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c angle xyz convention in Appendix A
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c
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c
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subroutine rigidxyz

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