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🗑️ Update test_stainnorm.py
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tests/test_stainnorm.py

Lines changed: 15 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -170,7 +170,7 @@ def test_vahadane_normalize(
170170
# -------------------------------------------------------------------------------------
171171

172172

173-
def test_command_line_stainnorm(source_image: Path, tmp_path: Path) -> None:
173+
def test_command_line_stainnorm(source_image: Path, track_tmp_path: Path) -> None:
174174
"""Test for the stain normalization CLI."""
175175
source_img = Path(source_image)
176176
target_img = _local_sample_path("target_image.png")
@@ -184,7 +184,7 @@ def test_command_line_stainnorm(source_image: Path, tmp_path: Path) -> None:
184184
"--target-input",
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target_img,
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"--output-path",
187-
str(tmp_path / "stainnorm_output"),
187+
str(track_tmp_path / "stainnorm_output"),
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"--method",
189189
"reinhard",
190190
],
@@ -201,7 +201,7 @@ def test_command_line_stainnorm(source_image: Path, tmp_path: Path) -> None:
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"--target-input",
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target_img,
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"--output-path",
204-
str(tmp_path / "stainnorm_output"),
204+
str(track_tmp_path / "stainnorm_output"),
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"--method",
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"ruifrok",
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],
@@ -218,7 +218,7 @@ def test_command_line_stainnorm(source_image: Path, tmp_path: Path) -> None:
218218
"--target-input",
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target_img,
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"--output-path",
221-
str(tmp_path / "stainnorm_output"),
221+
str(track_tmp_path / "stainnorm_output"),
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"--method",
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"macenko",
224224
],
@@ -235,7 +235,7 @@ def test_command_line_stainnorm(source_image: Path, tmp_path: Path) -> None:
235235
"--target-input",
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target_img,
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"--output-path",
238-
str(tmp_path / "stainnorm_output"),
238+
str(track_tmp_path / "stainnorm_output"),
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"--method",
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"vahadane",
241241
],
@@ -244,7 +244,7 @@ def test_command_line_stainnorm(source_image: Path, tmp_path: Path) -> None:
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assert stainnorm_result.exit_code == 0
245245

246246

247-
def test_cli_stainnorm_dir(source_image: Path, tmp_path: Path) -> None:
247+
def test_cli_stainnorm_dir(source_image: Path, track_tmp_path: Path) -> None:
248248
"""Test directory input for the stain normalization CLI."""
249249
source_img = source_image.parent
250250
target_img = _local_sample_path("target_image.png")
@@ -258,7 +258,7 @@ def test_cli_stainnorm_dir(source_image: Path, tmp_path: Path) -> None:
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"--target-input",
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target_img,
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"--output-path",
261-
str(tmp_path / "stainnorm_ouput"),
261+
str(track_tmp_path / "stainnorm_ouput"),
262262
"--method",
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"ruifrok",
264264
],
@@ -267,7 +267,9 @@ def test_cli_stainnorm_dir(source_image: Path, tmp_path: Path) -> None:
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assert stainnorm_result.exit_code == 0
268268

269269

270-
def test_cli_stainnorm_file_not_found_error(source_image: Path, tmp_path: Path) -> None:
270+
def test_cli_stainnorm_file_not_found_error(
271+
source_image: Path, track_tmp_path: Path
272+
) -> None:
271273
"""Test file not found error for the stain normalization CLI."""
272274
source_img = Path(source_image)
273275
target_img = stain_norm_target()
@@ -281,7 +283,7 @@ def test_cli_stainnorm_file_not_found_error(source_image: Path, tmp_path: Path)
281283
"--target-input",
282284
target_img,
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"--output-path",
284-
str(tmp_path / "stainnorm_output"),
286+
str(track_tmp_path / "stainnorm_output"),
285287
"--method",
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"vahadane",
287289
],
@@ -292,7 +294,9 @@ def test_cli_stainnorm_file_not_found_error(source_image: Path, tmp_path: Path)
292294
assert isinstance(stainnorm_result.exception, FileNotFoundError)
293295

294296

295-
def test_cli_stainnorm_method_not_supported(source_image: Path, tmp_path: Path) -> None:
297+
def test_cli_stainnorm_method_not_supported(
298+
source_image: Path, track_tmp_path: Path
299+
) -> None:
296300
"""Test method not supported for the stain normalization CLI."""
297301
source_img = Path(source_image)
298302
target_img = stain_norm_target()
@@ -306,7 +310,7 @@ def test_cli_stainnorm_method_not_supported(source_image: Path, tmp_path: Path)
306310
"--target-input",
307311
target_img,
308312
"--output-path",
309-
str(tmp_path / "stainnorm_output"),
313+
str(track_tmp_path / "stainnorm_output"),
310314
"--method",
311315
"Test",
312316
],

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