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181 | 181 | "import matplotlib.pyplot as plt\n", |
182 | 182 | "import numpy as np\n", |
183 | 183 | "import umap\n", |
| 184 | +<<<<<<< HEAD |
184 | 185 | "\n", |
185 | 186 | "# Import some extra modules\n", |
186 | 187 | "from huggingface_hub import notebook_login\n", |
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195 | 196 | "from tiatoolbox.utils.misc import download_data\n", |
196 | 197 | "from tiatoolbox.wsicore.wsireader import WSIReader\n", |
197 | 198 | "\n", |
| 199 | +======= |
| 200 | + "\n", |
| 201 | + "# Import some extra modules\n", |
| 202 | + "from huggingface_hub import notebook_login\n", |
| 203 | + "\n", |
| 204 | + "# Data processing and visualization\n", |
| 205 | + "# TIAToolbox for WSI loading and processing\n", |
| 206 | + "from tiatoolbox import logger\n", |
| 207 | + "from tiatoolbox.models.architecture.vanilla import TimmBackbone\n", |
| 208 | + "from tiatoolbox.models.engine.semantic_segmentor import (\n", |
| 209 | + " DeepFeatureExtractor,\n", |
| 210 | + " IOSegmentorConfig,\n", |
| 211 | + ")\n", |
| 212 | + "from tiatoolbox.utils.misc import download_data\n", |
| 213 | + "from tiatoolbox.wsicore.wsireader import WSIReader\n", |
| 214 | + "\n", |
| 215 | +>>>>>>> 817ac3c093548a2c2568a673c795998b4ce139ad |
198 | 216 | "mpl.rcParams[\"figure.dpi\"] = 300 # for high resolution figure in notebook\n", |
199 | 217 | "mpl.rcParams[\"figure.facecolor\"] = \"white\" # To make sure text is visible in dark mode" |
200 | 218 | ] |
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385 | 403 | " mode=\"wsi\",\n", |
386 | 404 | " ioconfig=wsi_ioconfig,\n", |
387 | 405 | " save_dir=global_save_dir / \"wsi_features\",\n", |
| 406 | +<<<<<<< HEAD |
388 | 407 | " device=\"cuda\" if ON_GPU else \"cpu\",\n", |
| 408 | +======= |
| 409 | + " device=\"cuda\" if ON_GPU == True else \"cpu\",\n", |
| 410 | +>>>>>>> 817ac3c093548a2c2568a673c795998b4ce139ad |
389 | 411 | ")" |
390 | 412 | ] |
391 | 413 | }, |
|
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