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Update docs/visualization.rst
Co-authored-by: Shan E Ahmed Raza <[email protected]>
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docs/visualization.rst

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@@ -122,7 +122,7 @@ The main slide view can be made fullscreen by clicking the fullscreen icon in th
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Visualising Image Registration/Transformation
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^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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TIAToolbox provides a registration feature that allows visual alignment of images, such as H&E and IHC-stained slides, using Dual Window Mode. This feature enables quick visualization of registered regions without requiring full whole-slide registration. A precomputed registration matrix (e.g. an .mha or .npy file from prior affine/deformable registration) must be provided as an overlay. To perform registration, first open the Dual Window Mode and load the images:
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TIAToolbox offers a registration feature that facilitates the visual alignment of images, such as H&E and IHC-stained slides, using Dual Window Mode. This feature allows for quick visualization of registered regions without the need for full whole-slide registration. To utilize this feature, a precomputed registration matrix (e.g., an .mha or .npy file from prior affine/deformable registration) must be provided as an overlay.
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First, open the H&E (source) image in one window. Then open the IHC (target) image in the other window. Next, load the registration file (e.g. an .mha or .npy file) as an overlay on the source image to be registered. This overlay applies the transformation to the field of view displayed in the interface rather than the entire whole-slide image. This allows for rapid inspection of localised registration results without the computational cost of registering the full slide.
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