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Changelog

2025-07-08

All KG

Added

Initial change log created

Pharmacogenomics KG

Fixed

Update the parser to better capture format issues in biolink-compliant conversion process Update the parser to capture reverse direction in subjects & objects

AML KG

Implement similar updates to parser

2025-06-15

Pharmacogenomics KG

Changed

Parser (PrimeKG part) and config.json files

Added

smartapi.yaml

2025-05-30

Pharmacogenomics KG

Added

source: PrimeKG, PharmGKB

Removed

source: cell_marker_genes.csv, signor_genes.csv, van_galen_cell_type_genes.csv

AML KG

Initial parser and config.json files

Added

source: cell_marker_genes.csv, signor_genes.csv, van_galen_cell_type_genes.csv, AMLKG_Gene_Drug_curie.csv, AMLKG_Gene_Disease_curie.csv, AMLKG_DrugApproval_curie.csv, AML.MONDO_descendants.biolink.compliant.05_12_2025.csv

2025-05-13

Pharmacogenomics KG

Prototype

Initial script of using open-source LLM model to extract structured edges directly from pubmed abstracts

2025-04-01

Pharmacogenomics KG

Added

Initial parser and config.json files source: cell_marker_genes.csv, signor_genes.csv, van_galen_cell_type_genes.csv

2025-03-26

BigGIM KG

Added

Phases 1, parser and config.json files

2025-03-05

All KG

Added

Initial commitment to the repo

Please use the following labels

Knowledge graph levels: BigGIM KG, AML KG, Pharmacogenomics KG, All KG

Added, Changed, Fixed, Removed, Deprecated, Security, Prototype