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Copy file name to clipboardExpand all lines: en/advanced/commandline.md
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As developer, you pass arguments to the app using gradle's `--app` switch. Enclose the arguments in quotes. For instance `--args="--debug"` turns on debug mode.
Copy file name to clipboardExpand all lines: en/advanced/externalfiles.md
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There are several ways to open an external web page. In the entry editor, click on the icon "open" right of the text field to open the respective DOI or URL.
In the entry table you can select an entry and use the menu choice, keyboard shortcut or the right-click menu to open the file or web page. Finally, you can click on a URL or DOI icon.
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By default the entry table will contain a singly column containing an indicator whether there is a DOI or a URL linked. You can remove the "Link identifiers" column in **Options → Preferences → Entry table**.
Copy file name to clipboardExpand all lines: en/advanced/journalabbreviations.md
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JabRef includes a fairly extensive build-in list of journal abbreviations. This list is a merge of all lists available at [https://abbrv.jabref.org](https://abbrv.jabref.org). However, this might still be incomplete (or outdated) for the purposes of some users. Thus, JabRef allows to add abbreviations in the form of a personal list or external lists.
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You can link to a number of external lists. These links can be set up on top of the **Manage journal abbreviations** window. External lists are similar to the personal list. The _Open existing list_ button allows you to select an existing file on your computer.
External lists can be found at [JabRef's repository abbreviation lists](http://abbrv.jabref.org). These data files are in CSV format (using comma as separators):
By default the external editor used to push citations is TeXstudio. You can select another application in **Options → Preferences → External programs**. Under the **Push applications** section, click on the **Application to push entries to** field. This will cause a dropdown menu to appear, from which you are then able to select from a list of all the external editors you have configured.
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Once you have made your selection and click **Save**, the push-to-external application button icon will change to match that of the selected external editor application.
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When you click on the push-to-external application button, JabRef will export your selected entries to an open LaTeX file in the selected external editor application. As an example, here is what happens when you export one entry to TexStudio.
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As long as you continue using the same external editor application, clicking on the push-to-external application button for subsequent exports will just add new citations or extend an existing citation with additional entries. Following the example above, here is what happens when you export a second entry to TeXStudio on an existing citation, which is extended to include the new entry in your LaTeX document.
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Copy file name to clipboardExpand all lines: en/collaborative-work/sqldatabase/README.md
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After connecting to your shared database, your main window should look like this:
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JabRef will automatically detect your changes and push them to the shared side. JabRef will also constantly check if there is a newer version available. If you experience connection issues, you can pull changes from your shared database via the icon in the icon bar. If a newer version is available, JabRef will try to automatically merge the new version and your local copy. If this fails, the **Update refused** dialog will show up. You will then have to manually merge using the **Update refused** dialog. The dialog helps you by pointing out the differences, you then will have to choose if you want to keep your local version or update to the shared version. Confirm your merge by clicking on **Merge entries**.
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The **Update refused** dialog can also take a different form, if the BibEntry you currently work on has been deleted on the shared side. You can choose to keep the BibEntry in the database by clicking **Keep** or update to the shared side and click **Close**.
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If you experience a problem with your connection to your shared database, the **Connection lost** dialog will show up. You can choose to **Reconnect**, **Work offline** or **Close database**. Most of the time simply reconnecting will fix this problem, if that's not the case you will have to choose between **Work offline** or **Close database**. Pick **Work offline** if you want to make sure your changes are saved. If you think there is nothing to save just pick **Close database**. If you choose to work offline, JabRef will convert the shared database to a local .bib database. Since you are no longer working online, but instead on a local database, you will have to import your work via copy and paste into the shared database. However before you import it into the shared database, make sure to check if changes happened during your offline time. Otherwise you might override someone else's work.
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Copy file name to clipboardExpand all lines: en/collect/add-entry-manually.md
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For other types of entries, click on `Others.` That expands the window and displays the other entry types available:
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Finally, the [entry editor](../advanced/entryeditor/) opens and let you fill in the various fields.
Copy file name to clipboardExpand all lines: en/collect/add-entry-using-an-id.md
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ID search is carried out using the [International Standard Book Number](https://en.wikipedia.org/wiki/International\_Standard\_Book\_Number).
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### DiVA
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[DiVA (Digitala Vetenskapliga Arkivet)](https://info.diva-portal.org/about-diva/) is a database with publications from about [40](https://www.diva-portal.org/smash/aboutdiva.jsf) Swedish universities and research institutions.
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ID search is carried out using the DiVA id (diva2).
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### DOI
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JabRef uses [http://dx.doi.org/](http://dx.doi.org) (provided by [http://crossref.org/](http://crossref.org)) to convert the given DOI to a new entry.
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ID search is carried out using the DOI.
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{% hint style="warning" %}
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If JabRef cannot find the reference of your DOI using this ID type, please, try the same DOI with the ID type "mEDRA". The ID type mEDRA looks for the reference corresponding to a DOI too, but using another registration agency.
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ID search is carried out using the [ADS Bibcode](http://adsabs.github.io/help/actions/bibcode).
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Copy file name to clipboardExpand all lines: en/collect/add-pdfs-to-an-entry.md
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JabRef offers finding full text documents online. Mostly, these are PDFs file. To use this feature, go to "Lookup" and then select "Find full text documents online".
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<figure><imgsrc="../.gitbook/assets/image (1).png"alt=""><figcaption><p>Lookup > Search for unlinked local files</p></figcaption></figure>
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<figure><imgsrc="../.gitbook/assets/image.png"alt=""><figcaption><p>Lookup > Search for unlinked local files</p></figcaption></figure>
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Then, JabRef uses online services to find a PDF. (Implementation details are provided at the [developer's documentation](https://devdocs.jabref.org/code-howtos/fetchers.html).)
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<figure><imgsrc="../.gitbook/assets/image (2).png"alt=""><figcaption><p>JabRef looking up full text documents</p></figcaption></figure>
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<figure><imgsrc="../.gitbook/assets/image.png"alt=""><figcaption><p>JabRef looking up full text documents</p></figcaption></figure>
4. Choose a start directory using the "Browse" button.
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5. Click on "Search" / "Scan directory".
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6. In "Select files", the files not yet contained in the library are shown.
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8. Click on `Import`.
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The windows close and the entry table now contains the newly-imported entries.
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9. The entry editor with the last imported entry is shown .png>)
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9. The entry editor with the last imported entry is shown 
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10. You can now save the file and are finished.
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11. Optional: Click on "General" to see the linked file .png>)
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11. Optional: Click on "General" to see the linked file 
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12. Optional: Click on "BibTeX source" to see the BibTeX source 
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13. Optional: You have to shrink it to see the entry in the entry table, enlarge the JabRef window and use the mouse at the upper border of the entry editor 
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14. Optional: Press Esc to show the entry preview 
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JabRef also offers to change the filenames. You can adapt the pattern at Preferences -> Import 
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Select "Choose pattern" and choose "bibtexkey - title" .png>) This results in the setting `\bibtexkey\begin{title} - \format[RemoveBrackets]{\title}\end{title}`.
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Select "Choose pattern" and choose "bibtexkey - title"  This results in the setting `\bibtexkey\begin{title} - \format[RemoveBrackets]{\title}\end{title}`.
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This makes the filenames start with the bibtey key followed by the full title. In the concrete case, `\bibtexkey` only may be the better option as the described bibtey key already contains the title.
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