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Irina NicolaeIrina Nicolae
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Merge docs and spatial smoothing from 'dev'
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docs/Makefile

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# Minimal makefile for Sphinx documentation
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#
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# You can set these variables from the command line.
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SPHINXOPTS =
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SPHINXBUILD = sphinx-build
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SPHINXPROJ = adversarial-robustness-toolbox
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SOURCEDIR = .
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BUILDDIR = _build
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# Put it first so that "make" without argument is like "make help".
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help:
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@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
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.PHONY: help Makefile
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# Catch-all target: route all unknown targets to Sphinx using the new
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# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS).
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%: Makefile
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@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

docs/conf.py

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# -*- coding: utf-8 -*-
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#
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# Configuration file for the Sphinx documentation builder.
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#
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# This file does only contain a selection of the most common options. For a
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# full list see the documentation:
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# http://www.sphinx-doc.org/en/stable/config
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# -- Path setup --------------------------------------------------------------
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# If extensions (or modules to document with autodoc) are in another directory,
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# add these directories to sys.path here. If the directory is relative to the
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# documentation root, use os.path.abspath to make it absolute, like shown here.
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import os
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import sys
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sys.path.insert(0, os.path.abspath('..'))
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import src
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# -- Project information -----------------------------------------------------
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project = 'Adversarial Robustness Toolbox'
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copyright = '2018, IBM Corporation'
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author = 'Maria-Irina Nicolae'
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# The short X.Y version
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version = '0.1'
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# The full version, including alpha/beta/rc tags
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release = '0.1.0'
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# -- General configuration ---------------------------------------------------
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# If your documentation needs a minimal Sphinx version, state it here.
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#
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# needs_sphinx = '1.0'
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# Add any Sphinx extension module names here, as strings. They can be
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# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
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# ones.
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extensions = [
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'sphinx.ext.viewcode',
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'sphinx.ext.autodoc'
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]
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# Add any paths that contain templates here, relative to this directory.
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templates_path = ['_templates']
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# The suffix(es) of source filenames.
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# You can specify multiple suffix as a list of string:
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#
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# source_suffix = ['.rst', '.md']
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source_suffix = '.rst'
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# The master toctree document.
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master_doc = 'index'
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# The language for content autogenerated by Sphinx. Refer to documentation
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# for a list of supported languages.
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#
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# This is also used if you do content translation via gettext catalogs.
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# Usually you set "language" from the command line for these cases.
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language = None
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# List of patterns, relative to source directory, that match files and
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# directories to ignore when looking for source files.
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# This pattern also affects html_static_path and html_extra_path .
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exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
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# The name of the Pygments (syntax highlighting) style to use.
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pygments_style = 'sphinx'
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# -- Options for HTML output -------------------------------------------------
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# The theme to use for HTML and HTML Help pages. See the documentation for
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# a list of builtin themes.
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#
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# html_theme = 'alabaster'
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if os.environ.get('READTHEDOCS') != 'True':
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try:
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import sphinx_rtd_theme
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except ImportError:
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pass # assume we have sphinx >= 1.3
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else:
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html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
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html_theme = 'sphinx_rtd_theme'
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# Theme options are theme-specific and customize the look and feel of a theme
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# further. For a list of options available for each theme, see the
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# documentation.
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#
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# html_theme_options = {}
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# Add any paths that contain custom static files (such as style sheets) here,
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# relative to this directory. They are copied after the builtin static files,
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# so a file named "default.css" will overwrite the builtin "default.css".
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html_static_path = ['_static']
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# Custom sidebar templates, must be a dictionary that maps document names
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# to template names.
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#
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# The default sidebars (for documents that don't match any pattern) are
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# defined by theme itself. Builtin themes are using these templates by
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# default: ``['localtoc.html', 'relations.html', 'sourcelink.html',
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# 'searchbox.html']``.
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#
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# html_sidebars = {}
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# -- Options for HTMLHelp output ---------------------------------------------
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# Output file base name for HTML help builder.
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htmlhelp_basename = 'adversarial-robustness-toolboxdoc'
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# -- Options for LaTeX output ------------------------------------------------
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latex_elements = {
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# The paper size ('letterpaper' or 'a4paper').
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#
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# 'papersize': 'letterpaper',
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# The font size ('10pt', '11pt' or '12pt').
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#
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# 'pointsize': '10pt',
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# Additional stuff for the LaTeX preamble.
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#
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# 'preamble': '',
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# Latex figure (float) alignment
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#
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# 'figure_align': 'htbp',
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}
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# Grouping the document tree into LaTeX files. List of tuples
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# (source start file, target name, title,
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# author, documentclass [howto, manual, or own class]).
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latex_documents = [
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(master_doc, 'adversarial-robustness-toolbox.tex', 'adversarial-robustness-toolbox Documentation',
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'Maria-Irina Nicolae', 'manual'),
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]
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# -- Options for manual page output ------------------------------------------
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# One entry per manual page. List of tuples
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# (source start file, name, description, authors, manual section).
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man_pages = [
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(master_doc, 'adversarial-robustness-toolbox', 'adversarial-robustness-toolbox Documentation',
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[author], 1)
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]
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# -- Options for Texinfo output ----------------------------------------------
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# Grouping the document tree into Texinfo files. List of tuples
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# (source start file, target name, title, author,
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# dir menu entry, description, category)
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texinfo_documents = [
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(master_doc, 'adversarial-robustness-toolbox', 'adversarial-robustness-toolbox Documentation',
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author, 'adversarial-robustness-toolbox', 'One line description of project.',
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'Miscellaneous'),
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]
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# -- Extension configuration -------------------------------------------------

docs/guide/setup.rst

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Setup
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=====
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The Adversarial Robustness Toolbox is designed to run with Python 3 and Python 2 (with small changes).
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You can either download the source code or clone the repository in your directory of choice:
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.. code-block:: bash
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git clone https://github.com/IBM/adversarial-robustness-toolbox
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To install the project dependencies, use the requirements file:
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.. code-block:: bash
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pip install .
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The library comes with a basic set of unit tests.
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To check your install, you can run all the unit tests by calling in the library folder:
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.. code-block:: bash
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bash run_tests.sh
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The configuration file `config/config.ini` allows to set custom paths for data.
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By default, data is downloaded in the `data` folder as follows:
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.. code-block:: none
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[DEFAULT]
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profile=LOCAL
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[LOCAL]
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data_path=./data
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mnist_path=./data/mnist
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cifar10_path=./data/cifar-10
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stl10_path=./data/stl-10
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If the datasets are not present at the indicated path, loading them will also download the data.

docs/guide/usage.rst

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Running scripts
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===============
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The library contains three main scripts for:
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* training a classifier using (`train.py`)
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* crafting adversarial examples on a trained model through (`generate_adversarial.py`)
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* testing model accuracy on different test sets using (`test_accuracies.py`)
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Detailed instructions for each script are available by typing
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.. code-block:: bash
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python3 <script_name> -h
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Examples
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========
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Some examples of how to use the toolbox when writing your own code can be found in the `examples` folder on `GitHub`_.
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See `examples/README.md` for more information about what each example does. To run an example, use the following command:
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.. code-block:: bash
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python3 examples/<example_name>.py
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.. _GitHub: https:github.com/IBM/adversarial-robustness-toolbox

docs/index.rst

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.. adversarial-robustness-toolbox documentation master file, created by
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sphinx-quickstart on Fri Mar 23 17:02:19 2018.
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You can adapt this file completely to your liking, but it should at least
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contain the root `toctree` directive.
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Welcome to the Adversarial Robustness Toolbox
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=============================================
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This is a library dedicated to **adversarial machine learning**.
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Its purpose is to allow rapid crafting and analysis of attacks and defense methods for machine learning models.
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The Adversarial Robustness Toolbox provides an implementation for many state-of-the-art methods for attacking and defending classifiers.
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The code can be found on `GitHub`_.
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The library is still under development. Feedback, bug reports and extensions are highly appreciated.
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Supported Attack and Defense Methods
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------------------------------------
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The Adversarial Robustness Toolbox contains implementations of the following attacks:
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* Deep Fool (`Moosavi-Dezfooli et al., 2015a`_)
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* Fast Gradient Method (`Goodfellow et al., 2014`_)
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* Jacobian Saliency Map (`Papernot et al., 2016`_)
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* Universal Perturbation (`Moosavi-Dezfooli et al., 2016`_)
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* Virtual Adversarial Method (`Moosavi-Dezfooli et al., 2015b`_)
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* C&amp;W Attack (`Carlini and Wagner, 2016`_)
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* NewtonFool (`Jang et al., 2017`_)
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The following defense methods are also supported:
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* Feature squeezing (`Xu et al., 2017`_)
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* Spatial smoothing (`Xu et al., 2017`_)
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* Label smoothing (`Warde-Farley and Goodfellow, 2016`_)
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* Adversarial training (`Szegedy et al., 2013`_)
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* Virtual adversarial training (`Miyato et al., 2017`_)
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.. toctree::
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:maxdepth: 2
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:caption: User guide
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guide/setup
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guide/usage
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.. toctree::
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:maxdepth: 2
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:caption: Modules
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modules/attacks
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modules/classifiers
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modules/defences
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modules/layers
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modules/metrics
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modules/utils
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Indices and tables
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==================
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* :ref:`genindex`
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* :ref:`modindex`
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* :ref:`search`
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.. _GitHub: https:github.com/IBM/adversarial-robustness-toolbox
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.. _Moosavi-Dezfooli et al., 2015a: https://arxiv.org/abs/1511.04599
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.. _Goodfellow et al., 2014: https://arxiv.org/abs/1412.6572
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.. _Papernot et al., 2016: https://arxiv.org/abs/1511.07528
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.. _Moosavi-Dezfooli et al., 2016: https://arxiv.org/abs/1610.08401
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.. _Moosavi-Dezfooli et al., 2015b: https://arxiv.org/abs/1507.00677
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.. _Carlini and Wagner, 2016: https://arxiv.org/abs/1608.04644
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.. _Jang et al., 2017: http://doi.acm.org/10.1145/3134600.3134635
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.. _Xu et al., 2017: http://arxiv.org/abs/1704.01155
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.. _Warde-Farley and Goodfellow, 2016: https://pdfs.semanticscholar.org/b5ec/486044c6218dd41b17d8bba502b32a12b91a.pdf
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.. _Szegedy et al., 2013: http://arxiv.org/abs/1312.6199
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.. _Miyato et al., 2017: https://arxiv.org/abs/1704.03976

docs/make.bat

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@ECHO OFF
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pushd %~dp0
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REM Command file for Sphinx documentation
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if "%SPHINXBUILD%" == "" (
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set SPHINXBUILD=sphinx-build
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)
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set SOURCEDIR=.
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set BUILDDIR=_build
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set SPHINXPROJ=adversarial-robustness-toolbox
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if "%1" == "" goto help
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%SPHINXBUILD% >NUL 2>NUL
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if errorlevel 9009 (
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echo.
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echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
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echo.installed, then set the SPHINXBUILD environment variable to point
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echo.to the full path of the 'sphinx-build' executable. Alternatively you
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echo.may add the Sphinx directory to PATH.
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echo.
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echo.If you don't have Sphinx installed, grab it from
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echo.http://sphinx-doc.org/
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exit /b 1
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)
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%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS%
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goto end
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:help
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%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS%
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:end
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popd

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