fix bug in hip file

y3tseng · y3tseng · commit b61eb9cd7a2a · 2025-12-23T12:15:11.000-08:00
diff --git a/src/hip/alignment-gpu.hip.cpp b/src/hip/alignment-gpu.hip.cpp
@@ -350,8 +350,8 @@ void msa::progressive::gpu::parallelAlignmentGPU(Tree *tree, NodePairVec &nodes,
                 }
                 else {
                     if ((database->currentTask == 0 && option->alnMode != 2) && 
-                        ((refNum == 1 && database->id_map[nodes[nIdx].first->seqsIncluded[0]]->lowQuality) || 
-                         (qryNum == 1 && database->id_map[nodes[nIdx].second->seqsIncluded[0]]->lowQuality))) {
+                        ((refNum == 1 && database->sequences[nodes[nIdx].first->seqsIncluded[0]]->lowQuality) || 
+                         (qryNum == 1 && database->sequences[nodes[nIdx].second->seqsIncluded[0]]->lowQuality))) {
                         aln[n].clear();
                         {
                             tbb::spin_rw_mutex::scoped_lock lock(fallbackMutex, true);

Original file line number	Diff line number	Diff line change
`@@ -350,8 +350,8 @@ void msa::progressive::gpu::parallelAlignmentGPU(Tree *tree, NodePairVec &nodes,`
`350`	`350`	`}`
`351`	`351`	`else {`
`352`	`352`	`if ((database->currentTask == 0 && option->alnMode != 2) &&`
`353`		`- ((refNum == 1 && database->id_map[nodes[nIdx].first->seqsIncluded[0]]->lowQuality) \|\|`
`354`		`- (qryNum == 1 && database->id_map[nodes[nIdx].second->seqsIncluded[0]]->lowQuality))) {`
	`353`	`+ ((refNum == 1 && database->sequences[nodes[nIdx].first->seqsIncluded[0]]->lowQuality) \|\|`
	`354`	`+ (qryNum == 1 && database->sequences[nodes[nIdx].second->seqsIncluded[0]]->lowQuality))) {`
`355`	`355`	`aln[n].clear();`
`356`	`356`	`{`
`357`	`357`	`tbb::spin_rw_mutex::scoped_lock lock(fallbackMutex, true);`