Initial exploration and validation of AbstractMCMC.jl repository

Co-authored-by: yebai <[email protected]>

Author: Copilot

Project.toml

@@ -10,6 +10,7 @@ BangBang = "198e06fe-97b7-11e9-32a5-e1d131e6ad66"
 ConsoleProgressMonitor = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b"
 Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b"
+JuliaFormatter = "98e50ef6-434e-11e9-1051-2b60c6c9e899"
 LogDensityProblems = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c"
 Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
 LoggingExtras = "e6f89c97-d47a-5376-807f-9c37f3926c36"
@@ -24,6 +25,7 @@ UUIDs = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
 BangBang = "0.3.19, 0.4"
 ConsoleProgressMonitor = "0.1"
 FillArrays = "1"
+JuliaFormatter = "2.1.6"
 LogDensityProblems = "2"
 LoggingExtras = "0.4, 0.5, 1"
 ProgressLogging = "0.1"

docs/Project.toml

@@ -1,4 +1,5 @@
 [deps]
+AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001"
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 

src/logging.jl

@@ -136,7 +136,7 @@ macro maybewithricherlogger(expr)
             else
                 $(expr)
             end
-        end,
+        end
     )
 end
 

test/sample.jl

@@ -509,12 +509,12 @@
         )
         @test all(ismissing(c.as[1]) for c in chains_threads)
         @test all(
-            c1.as[i] == c2.as[i] for (c1, c2) in zip(chains_serial, chains_threads),
-            i in 2:N
+            c1.as[i] == c2.as[i] for
+            (c1, c2) in zip(chains_serial, chains_threads), i in 2:N
         )
         @test all(
-            c1.bs[i] == c2.bs[i] for (c1, c2) in zip(chains_serial, chains_threads),
-            i in 1:N
+            c1.bs[i] == c2.bs[i] for
+            (c1, c2) in zip(chains_serial, chains_threads), i in 1:N
         )
 
         # Multi-core sampling
@@ -530,12 +530,12 @@
         )
         @test all(ismissing(c.as[1]) for c in chains_distributed)
         @test all(
-            c1.as[i] == c2.as[i] for (c1, c2) in zip(chains_serial, chains_distributed),
-            i in 2:N
+            c1.as[i] == c2.as[i] for
+            (c1, c2) in zip(chains_serial, chains_distributed), i in 2:N
         )
         @test all(
-            c1.bs[i] == c2.bs[i] for (c1, c2) in zip(chains_serial, chains_distributed),
-            i in 1:N
+            c1.bs[i] == c2.bs[i] for
+            (c1, c2) in zip(chains_serial, chains_distributed), i in 1:N
         )
     end