Update Turing folder (#204)

Author: devmotion

test/Project.toml

@@ -2,6 +2,7 @@
 AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001"
 AdvancedHMC = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d"
 AdvancedMH = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170"
+AdvancedPS = "576499cb-2369-40b2-a588-c64705576edc"
 AdvancedVI = "b5ca4192-6429-45e5-a2d9-87aec30a685c"
 BangBang = "198e06fe-97b7-11e9-32a5-e1d131e6ad66"
 Bijectors = "76274a88-744f-5084-9051-94815aaf08c4"
@@ -35,13 +36,14 @@ ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444"
 AbstractMCMC = "2.1"
 AdvancedHMC = "0.2.25"
 AdvancedMH = "0.5.2"
+AdvancedPS = "0.1"
 AdvancedVI = "0.1"
 BangBang = "0.3"
 Bijectors = "0.8.2"
 Distributions = "0.23.8, 0.24"
 DistributionsAD = "0.6.3"
 DocStringExtensions = "0.8.2"
-EllipticalSliceSampling = "0.3"
+EllipticalSliceSampling = "0.4"
 ForwardDiff = "0.10.12"
 Libtask = "0.4.1, 0.5"
 LogDensityProblems = "0.10.3"

test/Turing/Turing.jl

@@ -17,12 +17,20 @@ using Tracker: Tracker
 
 import AdvancedVI
 import DynamicPPL: getspace, NoDist, NamedDist
+import Random
 
 const PROGRESS = Ref(true)
-function turnprogress(switch::Bool)
-    @info "[Turing]: progress logging is $(switch ? "enabled" : "disabled") globally"
-    PROGRESS[] = switch
-    AdvancedVI.turnprogress(switch)
+
+"""
+    setprogress!(progress::Bool)
+
+Enable progress logging in Turing if `progress` is `true`, and disable it otherwise.
+"""
+function setprogress!(progress::Bool)
+    @info "[Turing]: progress logging is $(progress ? "enabled" : "disabled") globally"
+    PROGRESS[] = progress
+    AdvancedVI.turnprogress(progress)
+    return progress
 end
 
 # Random probability measures.
@@ -82,6 +90,7 @@ export  @model,                 # modelling
         Emcee,
         ESS,
         Gibbs,
+        GibbsConditional,
 
         HMC,                    # Hamiltonian-like sampling
         SGLD,
@@ -109,7 +118,7 @@ export  @model,                 # modelling
         setadbackend,
         setadsafe,
 
-        turnprogress,           # debugging
+        setprogress!,           # debugging
 
         Flat,
         FlatPos,
@@ -123,7 +132,8 @@ export  @model,                 # modelling
 
         predict,
         pointwise_loglikelihoods,
-        genereated_quantities,
+        elementwise_loglikelihoods,
+        generated_quantities,
         logprior,
         logjoint
 end