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shravanngoswamiishravanngoswamii
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New Folder Structure (#368)
Please have a look at all GHA workflows before merging, I have changed them properly but please review them incase I missed something! Closes #363
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‎.github/workflows/Benchmark.yml‎

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@@ -4,8 +4,9 @@ on:
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pull_request:
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branches:
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- main
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paths-ignore:
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- 'DoodleBUGS/**'
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paths:
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- 'JuliaBUGS/**'
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- '.github/workflows/Benchmark.yml'
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workflow_dispatch:
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permissions:
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path: |
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~/.julia
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~/.julia/artifacts
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key: ${{ runner.os }}-julia-benchmark-${{ matrix.arch }}-${{ hashFiles('**/Project.toml', '**/Manifest.toml') }}
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key: ${{ runner.os }}-julia-benchmark-${{ matrix.arch }}-${{ hashFiles('JuliaBUGS/**/Project.toml', 'JuliaBUGS/**/Manifest.toml') }}
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restore-keys: |
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${{ runner.os }}-julia-benchmark-${{ matrix.arch }}-
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${{ runner.os }}-julia-benchmark-
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- name: Run benchmarks
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working-directory: ./JuliaBUGS
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run: |
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julia --project=benchmark -e 'using Pkg; Pkg.instantiate()'
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julia --project=benchmark benchmark/run_benchmarks.jl > benchmark_results_${{ matrix.os }}.txt
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uses: actions/upload-artifact@v4
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with:
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name: benchmark-results-${{ matrix.os }}
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path: benchmark_results_${{ matrix.os }}.txt
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path: JuliaBUGS/benchmark_results_${{ matrix.os }}.txt
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retention-days: 7
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post-results:

‎.github/workflows/CompatHelper.yml‎

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- name: "Run CompatHelper"
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run: |
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import CompatHelper
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CompatHelper.main()
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CompatHelper.main(subdirs=["JuliaBUGS"])
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shell: julia --color=yes {0}
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

‎.github/workflows/Coverage.yml‎

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push:
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branches:
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- main
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paths:
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- 'JuliaBUGS/**'
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- '.github/workflows/Coverage.yml'
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pull_request:
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paths:
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- 'JuliaBUGS/**'
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- '.github/workflows/Coverage.yml'
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workflow_dispatch:
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jobs:
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path: |
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~/.julia
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~/.julia/artifacts
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key: ${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-${{ hashFiles('**/Project.toml', '**/Manifest.toml') }}
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key: ${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-${{ hashFiles('JuliaBUGS/**/Project.toml', 'JuliaBUGS/**/Manifest.toml') }}
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restore-keys: |
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${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-
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${{ runner.os }}-julia-${{ matrix.version }}-
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- uses: julia-actions/julia-buildpkg@v1
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with:
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project: JuliaBUGS
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- name: Running all tests with coverage
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uses: julia-actions/julia-runtest@v1
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with:
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project: JuliaBUGS
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env:
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TEST_GROUP: "all"
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- uses: julia-actions/julia-processcoverage@v1
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with:
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directories: JuliaBUGS
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- uses: codecov/codecov-action@v4
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with:
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file: lcov.info
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file: JuliaBUGS/lcov.info
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- uses: coverallsapp/github-action@master
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with:
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github-token: ${{ secrets.GITHUB_TOKEN }}
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path-to-lcov: lcov.info
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path-to-lcov: JuliaBUGS/lcov.info

‎.github/workflows/Docs.yml‎

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branches:
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- main
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tags: '*'
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paths-ignore:
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- 'DoodleBUGS/**'
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paths:
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- 'JuliaBUGS/docs/**'
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- 'JuliaBUGS/src/**'
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- '.github/workflows/Docs.yml'
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pull_request:
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paths-ignore:
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- 'DoodleBUGS/**'
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paths:
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- 'JuliaBUGS/docs/**'
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- 'JuliaBUGS/src/**'
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- '.github/workflows/Docs.yml'
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concurrency:
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# Skip intermediate builds: always.
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steps:
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- name: Build and deploy Documenter.jl docs
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uses: TuringLang/actions/DocsDocumenter@main
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with:
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pkg_path: JuliaBUGS
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doc-path: JuliaBUGS/docs
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doc-make-path: JuliaBUGS/docs/make.jl
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doc-build-path: JuliaBUGS/docs/build

‎.github/workflows/Format.yml‎

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paths-ignore:
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- 'DoodleBUGS/**'
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paths:
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- 'JuliaBUGS/**'
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- '.github/workflows/Format.yml'
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push:
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branches:
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- gh/update_manifests
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paths:
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- 'JuliaBUGS/**'
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- '.github/workflows/Format.yml'
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# Skip intermediate builds: always.
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format:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v4
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- uses: julia-actions/setup-julia@latest
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with:
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version: 1
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using Pkg
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Pkg.add(; name="JuliaFormatter", uuid="98e50ef6-434e-11e9-1051-2b60c6c9e899")
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using JuliaFormatter
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format("."; verbose=true)
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format("JuliaBUGS"; verbose=true)
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shell: julia --color=yes {0}
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- uses: reviewdog/action-suggester@v1
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with:

‎.github/workflows/Tests.yml‎

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push:
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branches:
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- main
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paths-ignore:
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- 'DoodleBUGS/**'
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paths:
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- 'JuliaBUGS/**'
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- '.github/workflows/Tests.yml'
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pull_request:
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paths-ignore:
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- 'DoodleBUGS/**'
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paths:
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- 'JuliaBUGS/**'
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- '.github/workflows/Tests.yml'
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workflow_dispatch:
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path: |
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~/.julia
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~/.julia/artifacts
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key: ${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-${{ hashFiles('**/Project.toml', '**/Manifest.toml') }}
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key: ${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-${{ hashFiles('JuliaBUGS/**/Project.toml', 'JuliaBUGS/**/Manifest.toml') }}
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restore-keys: |
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${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-
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${{ runner.os }}-julia-${{ matrix.version }}-
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- uses: julia-actions/julia-buildpkg@v1
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with:
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project: JuliaBUGS
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- name: Running ${{ matrix.test_group }} tests
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uses: julia-actions/julia-runtest@v1
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with:
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project: JuliaBUGS
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env:
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TEST_GROUP: ${{ matrix.test_group }}
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path: |
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key: ${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-${{ hashFiles('**/Project.toml', '**/Manifest.toml') }}
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key: ${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-${{ hashFiles('JuliaBUGS/**/Project.toml', 'JuliaBUGS/**/Manifest.toml') }}
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restore-keys: |
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${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-
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${{ runner.os }}-julia-${{ matrix.version }}-
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- uses: julia-actions/julia-buildpkg@v1
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with:
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project: JuliaBUGS
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- name: Running ${{ matrix.test_group }} tests
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uses: julia-actions/julia-runtest@v1
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with:
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project: JuliaBUGS
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env:
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TEST_GROUP: ${{ matrix.test_group }}
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path: |
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~/.julia
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~/.julia/artifacts
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key: ${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-${{ hashFiles('**/Project.toml', '**/Manifest.toml') }}
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key: ${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-${{ hashFiles('JuliaBUGS/**/Project.toml', 'JuliaBUGS/**/Manifest.toml') }}
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${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-
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${{ runner.os }}-julia-${{ matrix.version }}-
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- uses: julia-actions/julia-buildpkg@v1
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with:
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project: JuliaBUGS
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- name: Set thread count
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id: threads
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run: echo "count=$(nproc)" >> $GITHUB_OUTPUT
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- name: Running parallel_sampling tests
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uses: julia-actions/julia-runtest@v1
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with:
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project: JuliaBUGS
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TEST_GROUP: parallel_sampling
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JULIA_NUM_THREADS: ${{ steps.threads.outputs.count }}

‎.github/workflows/TestsMacOS.yml‎

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name: Tests
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name: TestsMacOS
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push:
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branches:
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- main
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paths-ignore:
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- 'DoodleBUGS/**'
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paths:
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- 'JuliaBUGS/**'
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- '.github/workflows/TestsMacOS.yml'
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pull_request:
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paths-ignore:
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- 'DoodleBUGS/**'
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paths:
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- 'JuliaBUGS/**'
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- '.github/workflows/TestsMacOS.yml'
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path: |
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~/.julia
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~/.julia/artifacts
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key: ${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-${{ hashFiles('**/Project.toml', '**/Manifest.toml') }}
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key: ${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-${{ hashFiles('JuliaBUGS/**/Project.toml', 'JuliaBUGS/**/Manifest.toml') }}
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restore-keys: |
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${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-
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${{ runner.os }}-julia-${{ matrix.version }}-
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- uses: julia-actions/julia-buildpkg@v1
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with:
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project: JuliaBUGS
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- name: Running ${{ matrix.test_group }} tests
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uses: julia-actions/julia-runtest@v1
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with:
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project: JuliaBUGS
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env:
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TEST_GROUP: ${{ matrix.test_group }}
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~/.julia
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key: ${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-${{ hashFiles('**/Project.toml', '**/Manifest.toml') }}
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key: ${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-${{ hashFiles('JuliaBUGS/**/Project.toml', 'JuliaBUGS/**/Manifest.toml') }}
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restore-keys: |
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${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-
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${{ runner.os }}-julia-${{ matrix.version }}-
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- uses: julia-actions/julia-buildpkg@v1
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with:
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project: JuliaBUGS
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- name: Running ${{ matrix.test_group }} tests
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uses: julia-actions/julia-runtest@v1
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with:
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project: JuliaBUGS
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env:
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TEST_GROUP: ${{ matrix.test_group }}
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~/.julia
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key: ${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-${{ hashFiles('**/Project.toml', '**/Manifest.toml') }}
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key: ${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-${{ hashFiles('JuliaBUGS/**/Project.toml', 'JuliaBUGS/**/Manifest.toml') }}
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restore-keys: |
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${{ runner.os }}-julia-${{ matrix.version }}-${{ matrix.arch }}-
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${{ runner.os }}-julia-${{ matrix.version }}-
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- uses: julia-actions/julia-buildpkg@v1
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with:
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project: JuliaBUGS
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- name: Set thread count
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id: threads
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run: echo "count=$(sysctl -n hw.activecpu)" >> $GITHUB_OUTPUT
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- name: Running parallel_sampling tests
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uses: julia-actions/julia-runtest@v1
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with:
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project: JuliaBUGS
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env:
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TEST_GROUP: parallel_sampling
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JULIA_NUM_THREADS: ${{ steps.threads.outputs.count }}

‎.gitignore‎

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# Julia code coverage files
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*.jl.cov
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*.jl.*.cov
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# Local configuration files
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*.local.*
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# gitingest generated files
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digest.txt

‎.JuliaFormatter.toml‎ renamed to ‎JuliaBUGS/.JuliaFormatter.toml‎

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‎.gitmodules‎ renamed to ‎JuliaBUGS/.gitmodules‎

File renamed without changes.

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