Fix and enable experimental tests (#365)

Author: sunxd3

src/experimental/ProbabilisticGraphicalModels/ProbabilisticGraphicalModels.jl

@@ -14,18 +14,4 @@ using LogExpFunctions
 include("bayesian_network.jl")
 include("conditioning.jl")
 include("functions.jl")
-
-export BayesianNetwork,
-    condition,
-    condition!,
-    decondition,
-    decondition!,
-    ancestral_sampling,
-    is_conditionally_independent,
-    add_deterministic_vertex!,
-    add_stochastic_vertex!,
-    add_vertex!,
-    translate_BUGSGraph_to_BayesianNetwork,
-    evaluate,
-    evaluate_with_values
 end

src/experimental/ProbabilisticGraphicalModels/bayesian_network.jl

@@ -240,7 +240,7 @@ function evaluate_with_values(bn::BayesianNetwork, parameter_values::AbstractVec
                 end
                 l = var_lengths[vn]
                 b_inv = Bijectors.inverse(b)
-                reconstructed_value = JuliaBUGS.reconstruct(
+                reconstructed_value = JuliaBUGS.Model.reconstruct(
                     b_inv, dist, view(parameter_values, current_idx:(current_idx + l - 1))
                 )
                 value, logjac = Bijectors.with_logabsdet_jacobian(
@@ -518,7 +518,7 @@ function _marginalize_recursive(
         b_inv = Bijectors.inverse(b)
         param_slice = view(parameter_values, param_idx:(param_idx + l - 1))
 
-        reconstructed_value = JuliaBUGS.reconstruct(b_inv, dist, param_slice)
+        reconstructed_value = JuliaBUGS.Model.reconstruct(b_inv, dist, param_slice)
         value, logjac = Bijectors.with_logabsdet_jacobian(b_inv, reconstructed_value)
 
         new_env = BangBang.setindex!!(env, value, current_name)

test/Project.toml

@@ -15,6 +15,7 @@ JuliaSyntax = "70703baa-626e-46a2-a12c-08ffd08c73b4"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 LogDensityProblems = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c"
 LogDensityProblemsAD = "996a588d-648d-4e1f-a8f0-a84b347e47b1"
+LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
 MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d"
 MacroTools = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
 MetaGraphsNext = "fa8bd995-216d-47f1-8a91-f3b68fbeb377"
@@ -42,6 +43,7 @@ JuliaSyntax = "1"
 LinearAlgebra = "1.10"
 LogDensityProblems = "2"
 LogDensityProblemsAD = "1"
+LogExpFunctions = "0.3"
 MCMCChains = "6"
 MacroTools = "0.5"
 MetaGraphsNext = "0.6, 0.7"