Remove DistributionsAD

Author: penelopeysm

Project.toml

@@ -17,7 +17,6 @@ Compat = "34da2185-b29b-5c13-b0c7-acf172513d20"
 DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
 DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
-DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c"
 DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
 DynamicPPL = "366bfd00-2699-11ea-058f-f148b4cae6d8"
 EllipticalSliceSampling = "cad2338a-1db2-11e9-3401-43bc07c9ede2"
@@ -60,7 +59,6 @@ Compat = "4.15.0"
 DataStructures = "0.18, 0.19"
 DifferentiationInterface = "0.7"
 Distributions = "0.25.77"
-DistributionsAD = "0.6"
 DocStringExtensions = "0.8, 0.9"
 DynamicHMC = "3.4"
 DynamicPPL = "0.40.6"

docs/make.jl

@@ -11,7 +11,6 @@ links = InterLinks(
     "AbstractMCMC" => "https://turinglang.org/AbstractMCMC.jl/stable/",
     "ADTypes" => "https://sciml.github.io/ADTypes.jl/stable/",
     "AdvancedVI" => "https://turinglang.org/AdvancedVI.jl/stable/",
-    "DistributionsAD" => "https://turinglang.org/DistributionsAD.jl/stable/",
     "OrderedCollections" => "https://juliacollections.github.io/OrderedCollections.jl/stable/",
     "Distributions" => "https://juliastats.org/Distributions.jl/stable/",
 )

docs/src/api.md

@@ -157,12 +157,12 @@ LogPoisson
 
 ### Tools to work with distributions
 
-| Exported symbol | Documentation                          | Description                                                    |
-|:--------------- |:-------------------------------------- |:-------------------------------------------------------------- |
-| `I`             | [`LinearAlgebra.I`](@extref)           | Identity matrix                                                |
-| `filldist`      | [`DistributionsAD.filldist`](@extref)  | Create a product distribution from a distribution and integers |
-| `arraydist`     | [`DistributionsAD.arraydist`](@extref) | Create a product distribution from an array of distributions   |
-| `NamedDist`     | [`DynamicPPL.NamedDist`](@extref)      | A distribution that carries the name of the variable           |
+| Exported symbol | Documentation                     | Description                                                    |
+|:--------------- |:--------------------------------- |:-------------------------------------------------------------- |
+| `I`             | [`LinearAlgebra.I`](@extref)      | Identity matrix                                                |
+| `filldist`      | [`DynamicPPL.filldist`](@extref)  | Create a product distribution from a distribution and integers |
+| `arraydist`     | [`DynamicPPL.arraydist`](@extref) | Create a product distribution from an array of distributions   |
+| `NamedDist`     | [`DynamicPPL.NamedDist`](@extref) | A distribution that carries the name of the variable           |
 
 ### Point estimates
 

src/Turing.jl

@@ -1,7 +1,7 @@
 module Turing
 
 using Reexport, ForwardDiff
-using DistributionsAD, Bijectors, StatsFuns, SpecialFunctions
+using Bijectors, StatsFuns, SpecialFunctions
 using Statistics, LinearAlgebra
 using Libtask
 @reexport using Distributions, MCMCChains
@@ -144,8 +144,8 @@ export
     LogPoisson,
     # Tools to work with Distributions
     I,  # LinearAlgebra
-    filldist,  # DistributionsAD
-    arraydist,  # DistributionsAD
+    filldist, # DynamicPPL
+    arraydist, # DynamicPPL
     NamedDist,  # DynamicPPL
     # Predictions - DynamicPPL
     predict,

src/mcmc/Inference.jl

@@ -16,7 +16,6 @@ using DynamicPPL:
     Model,
     DefaultContext
 using Distributions, Libtask, Bijectors
-using DistributionsAD: VectorOfMultivariate
 using LinearAlgebra
 using ..Turing: PROGRESS, Turing
 using StatsFuns: logsumexp

test/Project.toml

@@ -12,7 +12,6 @@ Clustering = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5"
 Combinatorics = "861a8166-3701-5b0c-9a16-15d98fcdc6aa"
 DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
-DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c"
 DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb"
 DynamicPPL = "366bfd00-2699-11ea-058f-f148b4cae6d8"
 FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000"
@@ -54,7 +53,6 @@ Clustering = "0.14, 0.15"
 Combinatorics = "1"
 DifferentiationInterface = "0.7"
 Distributions = "0.25"
-DistributionsAD = "0.6.3"
 DynamicHMC = "2.1.6, 3.0"
 DynamicPPL = "0.40.6"
 FiniteDifferences = "0.10.8, 0.11, 0.12"