Deploy preview for PR 608

Author: AoifeHughes

pr-previews/608/core-functionality/index.html

@@ -1003,16 +1003,16 @@ <h1>Consider a probabilistic model defined by</h1>
  <span class="ansi-bold"> parameters  </span><span class="ansi-bold">    mean  </span><span class="ansi-bold">     std  </span><span class="ansi-bold">    mcse  </span><span class="ansi-bold">    ess_bulk  </span><span class="ansi-bold">    ess_tail  </span><span class="ansi-bold">    rh ⋯
  </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold">     Float64  </span><span class="ansi-bright-black-fg ansi-bold">     Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float ⋯
 
-           a    0.9761    0.9003    0.0032    80996.1504   120761.1548    1.00 ⋯
-           b    2.8807    0.4892    0.0012   169532.7931   212343.5210    1.00 ⋯
+           a    0.9770    0.9007    0.0032    80229.7949   115823.8061    1.00 ⋯
+           b    2.8800    0.4884    0.0012   174005.7467   215911.6290    1.00 ⋯
 </span><span class="ansi-cyan-fg ansi-bold">                                                               2 columns omitted
 
 Quantiles
  </span><span class="ansi-cyan-fg ansi-bold"> parameters  </span><span class="ansi-cyan-fg ansi-bold">    2.5%  </span><span class="ansi-cyan-fg ansi-bold">   25.0%  </span><span class="ansi-cyan-fg ansi-bold">   50.0%  </span><span class="ansi-cyan-fg ansi-bold">   75.0%  </span><span class="ansi-cyan-fg ansi-bold">   97.5%
  </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64
 
-           a   -0.7900    0.3698    0.9736    1.5849    2.7370
-           b    1.9201    2.5500    2.8813    3.2103    3.8383
+           a   -0.7823    0.3701    0.9769    1.5829    2.7485
+           b    1.9243    2.5500    2.8801    3.2101    3.8375
 </span></pre>
 </div>
 </div>
@@ -1037,25 +1037,25 @@ <h1>Consider a probabilistic model defined by</h1>
 Iterations        = 1:1:1000000
 Number of chains  = 1
 Samples per chain = 1000000
-Wall duration     = 24.45 seconds
-Compute duration  = 24.45 seconds
+Wall duration     = 22.26 seconds
+Compute duration  = 22.26 seconds
 parameters        = a, b
 internals         = lp
 
 Summary Statistics
  <span class="ansi-bold"> parameters  </span><span class="ansi-bold">    mean  </span><span class="ansi-bold">     std  </span><span class="ansi-bold">    mcse  </span><span class="ansi-bold">    ess_bulk  </span><span class="ansi-bold">    ess_tail  </span><span class="ansi-bold">    rh ⋯
  </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold">     Float64  </span><span class="ansi-bright-black-fg ansi-bold">     Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float ⋯
 
-           a    0.9780    0.9016    0.0031    82020.3602   121725.2524    1.00 ⋯
-           b    2.8810    0.4897    0.0012   175647.1391   216521.0287    1.00 ⋯
+           a    0.9759    0.8989    0.0031    81478.4379   121430.9321    1.00 ⋯
+           b    2.8800    0.4883    0.0012   172090.2408   212739.6918    1.00 ⋯
 </span><span class="ansi-cyan-fg ansi-bold">                                                               2 columns omitted
 
 Quantiles
  </span><span class="ansi-cyan-fg ansi-bold"> parameters  </span><span class="ansi-cyan-fg ansi-bold">    2.5%  </span><span class="ansi-cyan-fg ansi-bold">   25.0%  </span><span class="ansi-cyan-fg ansi-bold">   50.0%  </span><span class="ansi-cyan-fg ansi-bold">   75.0%  </span><span class="ansi-cyan-fg ansi-bold">   97.5%
  </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64
 
-           a   -0.7965    0.3693    0.9783    1.5882    2.7384
-           b    1.9215    2.5505    2.8800    3.2120    3.8379
+           a   -0.7846    0.3694    0.9771    1.5821    2.7394
+           b    1.9243    2.5516    2.8794    3.2091    3.8381
 </span></pre>
 </div>
 </div>

pr-previews/608/developers/compiler/minituring-compiler/index.html

@@ -995,16 +995,16 @@ <h2 class="anchored" data-anchor-id="contexts-within-contexts">Contexts within c
  <span class="ansi-bold"> parameters  </span><span class="ansi-bold">    mean  </span><span class="ansi-bold">     std  </span><span class="ansi-bold">    mcse  </span><span class="ansi-bold">    ess_bulk  </span><span class="ansi-bold">    ess_tail  </span><span class="ansi-bold">    rh ⋯
  </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold">     Float64  </span><span class="ansi-bright-black-fg ansi-bold">     Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float ⋯
 
-           a    0.9752    0.8986    0.0031    81919.4857   120372.9676    1.00 ⋯
-           b    2.8814    0.4878    0.0012   173103.2059   217966.0645    1.00 ⋯
+           a    0.9763    0.9004    0.0031    82751.9761   122645.4106    1.00 ⋯
+           b    2.8832    0.4875    0.0012   171776.8254   210946.6459    1.00 ⋯
 </span><span class="ansi-cyan-fg ansi-bold">                                                               2 columns omitted
 
 Quantiles
  </span><span class="ansi-cyan-fg ansi-bold"> parameters  </span><span class="ansi-cyan-fg ansi-bold">    2.5%  </span><span class="ansi-cyan-fg ansi-bold">   25.0%  </span><span class="ansi-cyan-fg ansi-bold">   50.0%  </span><span class="ansi-cyan-fg ansi-bold">   75.0%  </span><span class="ansi-cyan-fg ansi-bold">   97.5%
  </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64
 
-           a   -0.7923    0.3684    0.9765    1.5835    2.7277
-           b    1.9254    2.5518    2.8806    3.2100    3.8387
+           a   -0.7949    0.3716    0.9780    1.5831    2.7411
+           b    1.9261    2.5549    2.8816    3.2127    3.8404
 </span></pre>
 </div>
 </div>
@@ -1025,16 +1025,16 @@ <h2 class="anchored" data-anchor-id="contexts-within-contexts">Contexts within c
  <span class="ansi-bold"> parameters  </span><span class="ansi-bold">    mean  </span><span class="ansi-bold">     std  </span><span class="ansi-bold">    mcse  </span><span class="ansi-bold">   ess_bulk  </span><span class="ansi-bold">    ess_tail  </span><span class="ansi-bold">    rha ⋯
  </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold">    Float64  </span><span class="ansi-bright-black-fg ansi-bold">     Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float6 ⋯
 
-           a    0.5019    1.0016    0.0040   63377.1363   126813.6278    1.000 ⋯
-           b    0.4952    2.2426    0.0137   26906.3461    50835.2695    1.000 ⋯
+           a    0.4972    1.0022    0.0039   64698.5904   122290.6572    1.000 ⋯
+           b    0.4930    2.2312    0.0135   27392.8868    52279.0692    1.000 ⋯
 </span><span class="ansi-cyan-fg ansi-bold">                                                               2 columns omitted
 
 Quantiles
  </span><span class="ansi-cyan-fg ansi-bold"> parameters  </span><span class="ansi-cyan-fg ansi-bold">    2.5%  </span><span class="ansi-cyan-fg ansi-bold">   25.0%  </span><span class="ansi-cyan-fg ansi-bold">   50.0%  </span><span class="ansi-cyan-fg ansi-bold">   75.0%  </span><span class="ansi-cyan-fg ansi-bold">   97.5%
  </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64
 
-           a   -1.4600   -0.1731    0.5022    1.1784    2.4619
-           b   -3.9145   -1.0156    0.4968    2.0051    4.8872
+           a   -1.4704   -0.1774    0.4969    1.1721    2.4601
+           b   -3.8937   -1.0074    0.4966    1.9922    4.8658
 </span></pre>
 </div>
 </div>

pr-previews/608/developers/compiler/minituring-contexts/index.html

@@ -781,7 +781,7 @@ <h1 class="title">Manually Defining a Model</h1>
 <div class="cell-output cell-output-stdout">
 <div class="ansi-escaped-output">
 <pre><span class="ansi-cyan-fg ansi-bold">┌ </span><span class="ansi-cyan-fg ansi-bold">Info: </span>Found initial step size
-<span class="ansi-cyan-fg ansi-bold">└ </span>  ϵ = 3.2
+<span class="ansi-cyan-fg ansi-bold">└ </span>  ϵ = 1.6
 </pre>
 </div>
 </div>
@@ -792,25 +792,25 @@ <h1 class="title">Manually Defining a Model</h1>
 Iterations        = 501:1:1500
 Number of chains  = 1
 Samples per chain = 1000
-Wall duration     = 7.22 seconds
-Compute duration  = 7.22 seconds
+Wall duration     = 7.78 seconds
+Compute duration  = 7.78 seconds
 parameters        = s², m
 internals         = lp, n_steps, is_accept, acceptance_rate, log_density, hamiltonian_energy, hamiltonian_energy_error, max_hamiltonian_energy_error, tree_depth, numerical_error, step_size, nom_step_size
 
 Summary Statistics
  <span class="ansi-bold"> parameters  </span><span class="ansi-bold">    mean  </span><span class="ansi-bold">     std  </span><span class="ansi-bold">    mcse  </span><span class="ansi-bold"> ess_bulk  </span><span class="ansi-bold"> ess_tail  </span><span class="ansi-bold">    rhat  </span><span class="ansi-bold"> e ⋯
  </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold">  Float64  </span><span class="ansi-bright-black-fg ansi-bold">  Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold">   ⋯
 
-          s²    1.9764    1.8850    0.1118   424.9188   360.7935    1.0068     ⋯
-           m    1.2004    0.7541    0.0299   649.8943   553.2861    0.9993     ⋯
+          s²    2.1088    1.7764    0.0861   526.3420   526.6393    0.9993     ⋯
+           m    1.1326    0.9055    0.0468   417.1995   324.9278    1.0000     ⋯
 </span><span class="ansi-cyan-fg ansi-bold">                                                                1 column omitted
 
 Quantiles
  </span><span class="ansi-cyan-fg ansi-bold"> parameters  </span><span class="ansi-cyan-fg ansi-bold">    2.5%  </span><span class="ansi-cyan-fg ansi-bold">   25.0%  </span><span class="ansi-cyan-fg ansi-bold">   50.0%  </span><span class="ansi-cyan-fg ansi-bold">   75.0%  </span><span class="ansi-cyan-fg ansi-bold">   97.5%
  </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64
 
-          s²    0.5640    1.0055    1.4524    2.2129    6.3452
-           m   -0.2507    0.7474    1.1909    1.6659    2.7612
+          s²    0.5653    1.0559    1.5414    2.4580    7.9572
+           m   -0.8408    0.6339    1.1605    1.6550    2.8626
 </span></pre>
 </div>
 </div>

pr-previews/608/developers/compiler/model-manual/index.html

@@ -789,29 +789,29 @@ <h2 class="anchored" data-anchor-id="introduction">Introduction</h2>
 <div class="ansi-escaped-output">
 <pre>Chains MCMC chain (1000×3×1 Array{Float64, 3}):
 
-Log evidence      = -3.6688971182991565
+Log evidence      = -3.737138487663251
 Iterations        = 1:1:1000
 Number of chains  = 1
 Samples per chain = 1000
-Wall duration     = 2.3 seconds
-Compute duration  = 2.3 seconds
+Wall duration     = 2.52 seconds
+Compute duration  = 2.52 seconds
 parameters        = s², m
 internals         = lp
 
 Summary Statistics
- <span class="ansi-bold"> parameters  </span><span class="ansi-bold">    mean  </span><span class="ansi-bold">     std  </span><span class="ansi-bold">    mcse  </span><span class="ansi-bold">  ess_bulk  </span><span class="ansi-bold"> ess_tail  </span><span class="ansi-bold">    rhat  </span><span class="ansi-bold">  ⋯
- </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold">   Float64  </span><span class="ansi-bright-black-fg ansi-bold">  Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold">  ⋯
+ <span class="ansi-bold"> parameters  </span><span class="ansi-bold">    mean  </span><span class="ansi-bold">     std  </span><span class="ansi-bold">    mcse  </span><span class="ansi-bold"> ess_bulk  </span><span class="ansi-bold"> ess_tail  </span><span class="ansi-bold">    rhat  </span><span class="ansi-bold"> e ⋯
+ </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold">  Float64  </span><span class="ansi-bright-black-fg ansi-bold">  Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold">   ⋯
 
-          s²    2.8567    4.1230    0.1399   1008.9658   974.1928    0.9993    ⋯
-           m   -0.0331    1.6536    0.0529    984.0693   935.0420    1.0032    ⋯
+          s²    3.0376    4.9665    0.1761   810.5962   814.6141    0.9992     ⋯
+           m   -0.0747    1.7616    0.0680   584.7917   720.8847    1.0010     ⋯
 </span><span class="ansi-cyan-fg ansi-bold">                                                                1 column omitted
 
 Quantiles
  </span><span class="ansi-cyan-fg ansi-bold"> parameters  </span><span class="ansi-cyan-fg ansi-bold">    2.5%  </span><span class="ansi-cyan-fg ansi-bold">   25.0%  </span><span class="ansi-cyan-fg ansi-bold">   50.0%  </span><span class="ansi-cyan-fg ansi-bold">   75.0%  </span><span class="ansi-cyan-fg ansi-bold">   97.5%
  </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64
 
-          s²    0.5009    1.0770    1.7924    3.0164   13.4678
-           m   -3.5517   -0.9915    0.0246    0.8327    3.1154
+          s²    0.5911    1.0986    1.8121    3.1440   12.5861
+           m   -3.9070   -0.9604   -0.0453    0.9082    3.1494
 </span></pre>
 </div>
 </div>
@@ -847,29 +847,29 @@ <h2 class="anchored" data-anchor-id="define-a-sampler">1. Define a Sampler</h2>
 <div class="ansi-escaped-output">
 <pre>Chains MCMC chain (1000×3×1 Array{Float64, 3}):
 
-Log evidence      = -3.762191956781653
+Log evidence      = -3.7523551519264897
 Iterations        = 1:1:1000
 Number of chains  = 1
 Samples per chain = 1000
-Wall duration     = 0.06 seconds
-Compute duration  = 0.06 seconds
+Wall duration     = 0.05 seconds
+Compute duration  = 0.05 seconds
 parameters        = s², m
 internals         = lp
 
 Summary Statistics
- <span class="ansi-bold"> parameters  </span><span class="ansi-bold">    mean  </span><span class="ansi-bold">     std  </span><span class="ansi-bold">    mcse  </span><span class="ansi-bold">  ess_bulk  </span><span class="ansi-bold">  ess_tail  </span><span class="ansi-bold">    rhat  </span><span class="ansi-bold"> ⋯
- </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold">   Float64  </span><span class="ansi-bright-black-fg ansi-bold">   Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> ⋯
+ <span class="ansi-bold"> parameters  </span><span class="ansi-bold">    mean  </span><span class="ansi-bold">     std  </span><span class="ansi-bold">    mcse  </span><span class="ansi-bold"> ess_bulk  </span><span class="ansi-bold"> ess_tail  </span><span class="ansi-bold">    rhat  </span><span class="ansi-bold"> e ⋯
+ </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold">  Float64  </span><span class="ansi-bright-black-fg ansi-bold">  Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold">   ⋯
 
-          s²    2.9581    5.2908    0.1768    991.6196    915.3549    0.9998   ⋯
-           m   -0.0547    1.7044    0.0530   1035.4052   1025.7469    1.0029   ⋯
+          s²    2.8593    4.0531    0.1306   966.9100   940.5429    0.9992     ⋯
+           m   -0.0308    1.6194    0.0524   957.2807   901.4391    1.0011     ⋯
 </span><span class="ansi-cyan-fg ansi-bold">                                                                1 column omitted
 
 Quantiles
  </span><span class="ansi-cyan-fg ansi-bold"> parameters  </span><span class="ansi-cyan-fg ansi-bold">    2.5%  </span><span class="ansi-cyan-fg ansi-bold">   25.0%  </span><span class="ansi-cyan-fg ansi-bold">   50.0%  </span><span class="ansi-cyan-fg ansi-bold">   75.0%  </span><span class="ansi-cyan-fg ansi-bold">   97.5%
  </span><span class="ansi-bright-black-fg ansi-bold">     Symbol  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64  </span><span class="ansi-bright-black-fg ansi-bold"> Float64
 
-          s²    0.5524    1.0801    1.8451    3.1037   13.2626
-           m   -3.6948   -0.9014   -0.0303    0.8787    3.2679
+          s²    0.5100    1.0937    1.7543    3.0801   11.7894
+           m   -3.0340   -0.9255   -0.0493    0.8250    3.3817
 </span></pre>
 </div>
 </div>