Skip to content

Commit d3d895d

Browse files
penelopeysmpenelopeysm
committed
Deploy preview for PR 624
1 parent 5bc20c9 commit d3d895d

File tree

34 files changed

+75175
-74158
lines changed

34 files changed

+75175
-74158
lines changed

‎pr-previews/624/core-functionality/index.html‎

Lines changed: 251 additions & 251 deletions
Large diffs are not rendered by default.

‎pr-previews/624/developers/compiler/minituring-compiler/index.html‎

Lines changed: 10 additions & 10 deletions
Original file line numberDiff line numberDiff line change
@@ -993,16 +993,16 @@ <h1>Consider a probabilistic model defined by</h1>
993993
<span class="ansi-bold"> parameters </span><span class="ansi-bold"> mean </span><span class="ansi-bold"> std </span><span class="ansi-bold"> mcse </span><span class="ansi-bold"> ess_bulk </span><span class="ansi-bold"> ess_tail </span><span class="ansi-bold"> rh ⋯
994994
</span><span class="ansi-bright-black-fg ansi-bold"> Symbol </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float ⋯
995995

996-
a 0.9789 0.8998 0.0032 80229.6060 118710.2696 1.00 ⋯
997-
b 2.8811 0.4894 0.0012 171029.6207 213462.2105 1.00 ⋯
996+
a 0.9760 0.8997 0.0032 80976.4156 121478.6934 1.00 ⋯
997+
b 2.8809 0.4886 0.0012 171921.0883 216946.9072 1.00 ⋯
998998
</span><span class="ansi-cyan-fg ansi-bold"> 2 columns omitted
999999

10001000
Quantiles
10011001
</span><span class="ansi-cyan-fg ansi-bold"> parameters </span><span class="ansi-cyan-fg ansi-bold"> 2.5% </span><span class="ansi-cyan-fg ansi-bold"> 25.0% </span><span class="ansi-cyan-fg ansi-bold"> 50.0% </span><span class="ansi-cyan-fg ansi-bold"> 75.0% </span><span class="ansi-cyan-fg ansi-bold"> 97.5%
10021002
</span><span class="ansi-bright-black-fg ansi-bold"> Symbol </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64
10031003

1004-
a -0.7764 0.3726 0.9795 1.5837 2.7474
1005-
b 1.9255 2.5492 2.8801 3.2111 3.8409
1004+
a -0.7844 0.3692 0.9762 1.5874 2.7302
1005+
b 1.9234 2.5508 2.8819 3.2110 3.8376
10061006
</span></pre>
10071007
</div>
10081008
</div>
@@ -1027,25 +1027,25 @@ <h1>Consider a probabilistic model defined by</h1>
10271027
Iterations = 1:1:1000000
10281028
Number of chains = 1
10291029
Samples per chain = 1000000
1030-
Wall duration = 25.08 seconds
1031-
Compute duration = 25.08 seconds
1030+
Wall duration = 25.24 seconds
1031+
Compute duration = 25.24 seconds
10321032
parameters = a, b
10331033
internals = lp
10341034

10351035
Summary Statistics
10361036
<span class="ansi-bold"> parameters </span><span class="ansi-bold"> mean </span><span class="ansi-bold"> std </span><span class="ansi-bold"> mcse </span><span class="ansi-bold"> ess_bulk </span><span class="ansi-bold"> ess_tail </span><span class="ansi-bold"> rh ⋯
10371037
</span><span class="ansi-bright-black-fg ansi-bold"> Symbol </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float ⋯
10381038

1039-
a 0.9736 0.8997 0.0032 80667.2676 120139.3768 1.00 ⋯
1040-
b 2.8795 0.4883 0.0012 166897.7569 210884.7621 1.00 ⋯
1039+
a 0.9719 0.9002 0.0032 81149.8948 121833.3816 1.00 ⋯
1040+
b 2.8809 0.4883 0.0012 173879.7958 211063.6105 1.00 ⋯
10411041
</span><span class="ansi-cyan-fg ansi-bold"> 2 columns omitted
10421042

10431043
Quantiles
10441044
</span><span class="ansi-cyan-fg ansi-bold"> parameters </span><span class="ansi-cyan-fg ansi-bold"> 2.5% </span><span class="ansi-cyan-fg ansi-bold"> 25.0% </span><span class="ansi-cyan-fg ansi-bold"> 50.0% </span><span class="ansi-cyan-fg ansi-bold"> 75.0% </span><span class="ansi-cyan-fg ansi-bold"> 97.5%
10451045
</span><span class="ansi-bright-black-fg ansi-bold"> Symbol </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64
10461046

1047-
a -0.7858 0.3670 0.9733 1.5805 2.7366
1048-
b 1.9226 2.5494 2.8800 3.2091 3.8363
1047+
a -0.7987 0.3653 0.9734 1.5813 2.7306
1048+
b 1.9230 2.5525 2.8805 3.2092 3.8382
10491049
</span></pre>
10501050
</div>
10511051
</div>

‎pr-previews/624/developers/compiler/minituring-contexts/index.html‎

Lines changed: 8 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -985,16 +985,16 @@ <h2 class="anchored" data-anchor-id="contexts-within-contexts">Contexts within c
985985
<span class="ansi-bold"> parameters </span><span class="ansi-bold"> mean </span><span class="ansi-bold"> std </span><span class="ansi-bold"> mcse </span><span class="ansi-bold"> ess_bulk </span><span class="ansi-bold"> ess_tail </span><span class="ansi-bold"> rh ⋯
986986
</span><span class="ansi-bright-black-fg ansi-bold"> Symbol </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float ⋯
987987

988-
a 0.9755 0.9028 0.0032 79712.4774 119846.2427 1.00 ⋯
989-
b 2.8787 0.4877 0.0012 172101.3941 212741.8470 1.00 ⋯
988+
a 0.9686 0.8979 0.0032 80821.3975 122047.4053 1.00 ⋯
989+
b 2.8799 0.4877 0.0012 170913.1195 216058.8326 1.00 ⋯
990990
</span><span class="ansi-cyan-fg ansi-bold"> 2 columns omitted
991991

992992
Quantiles
993993
</span><span class="ansi-cyan-fg ansi-bold"> parameters </span><span class="ansi-cyan-fg ansi-bold"> 2.5% </span><span class="ansi-cyan-fg ansi-bold"> 25.0% </span><span class="ansi-cyan-fg ansi-bold"> 50.0% </span><span class="ansi-cyan-fg ansi-bold"> 75.0% </span><span class="ansi-cyan-fg ansi-bold"> 97.5%
994994
</span><span class="ansi-bright-black-fg ansi-bold"> Symbol </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64
995995

996-
a -0.7952 0.3667 0.9748 1.5819 2.7505
997-
b 1.9202 2.5498 2.8786 3.2074 3.8312
996+
a -0.7938 0.3632 0.9693 1.5752 2.7257
997+
b 1.9267 2.5509 2.8804 3.2084 3.8339
998998
</span></pre>
999999
</div>
10001000
</div>
@@ -1015,16 +1015,16 @@ <h2 class="anchored" data-anchor-id="contexts-within-contexts">Contexts within c
10151015
<span class="ansi-bold"> parameters </span><span class="ansi-bold"> mean </span><span class="ansi-bold"> std </span><span class="ansi-bold"> mcse </span><span class="ansi-bold"> ess_bulk </span><span class="ansi-bold"> ess_tail </span><span class="ansi-bold"> rha ⋯
10161016
</span><span class="ansi-bright-black-fg ansi-bold"> Symbol </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float6 ⋯
10171017

1018-
a 0.4958 0.9994 0.0040 62670.4494 125963.9276 1.000 ⋯
1019-
b 0.5014 2.2439 0.0138 26555.0543 52590.0350 1.000 ⋯
1018+
a 0.4976 1.0032 0.0039 65010.5600 127742.7683 1.000 ⋯
1019+
b 0.4902 2.2414 0.0135 27461.2293 54511.8135 1.000 ⋯
10201020
</span><span class="ansi-cyan-fg ansi-bold"> 2 columns omitted
10211021

10221022
Quantiles
10231023
</span><span class="ansi-cyan-fg ansi-bold"> parameters </span><span class="ansi-cyan-fg ansi-bold"> 2.5% </span><span class="ansi-cyan-fg ansi-bold"> 25.0% </span><span class="ansi-cyan-fg ansi-bold"> 50.0% </span><span class="ansi-cyan-fg ansi-bold"> 75.0% </span><span class="ansi-cyan-fg ansi-bold"> 97.5%
10241024
</span><span class="ansi-bright-black-fg ansi-bold"> Symbol </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64
10251025

1026-
a -1.4593 -0.1793 0.4950 1.1704 2.4563
1027-
b -3.9013 -1.0129 0.5069 2.0229 4.8650
1026+
a -1.4659 -0.1808 0.4985 1.1738 2.4649
1027+
b -3.8869 -1.0217 0.4875 2.0041 4.8850
10281028
</span></pre>
10291029
</div>
10301030
</div>

‎pr-previews/624/developers/compiler/model-manual/index.html‎

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -771,7 +771,7 @@ <h1 class="title">Manually Defining a Model</h1>
771771
<div class="cell-output cell-output-stdout">
772772
<div class="ansi-escaped-output">
773773
<pre><span class="ansi-cyan-fg ansi-bold">┌ </span><span class="ansi-cyan-fg ansi-bold">Info: </span>Found initial step size
774-
<span class="ansi-cyan-fg ansi-bold">└ </span> ϵ = 0.8
774+
<span class="ansi-cyan-fg ansi-bold">└ </span> ϵ = 1.6
775775
</pre>
776776
</div>
777777
</div>
@@ -782,25 +782,25 @@ <h1 class="title">Manually Defining a Model</h1>
782782
Iterations = 501:1:1500
783783
Number of chains = 1
784784
Samples per chain = 1000
785-
Wall duration = 7.69 seconds
786-
Compute duration = 7.69 seconds
785+
Wall duration = 7.24 seconds
786+
Compute duration = 7.24 seconds
787787
parameters = s², m
788788
internals = lp, n_steps, is_accept, acceptance_rate, log_density, hamiltonian_energy, hamiltonian_energy_error, max_hamiltonian_energy_error, tree_depth, numerical_error, step_size, nom_step_size
789789

790790
Summary Statistics
791791
<span class="ansi-bold"> parameters </span><span class="ansi-bold"> mean </span><span class="ansi-bold"> std </span><span class="ansi-bold"> mcse </span><span class="ansi-bold"> ess_bulk </span><span class="ansi-bold"> ess_tail </span><span class="ansi-bold"> rhat </span><span class="ansi-bold"> e ⋯
792792
</span><span class="ansi-bright-black-fg ansi-bold"> Symbol </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> ⋯
793793

794-
s² 1.9412 1.6911 0.0696 650.9182 678.9875 0.9994 ⋯
795-
m 1.1561 0.7919 0.0304 696.1168 413.9345 1.0011 ⋯
794+
s² 1.9986 1.6549 0.0791 431.1048 494.9451 1.0018 ⋯
795+
m 1.2237 0.7911 0.0400 375.5828 462.2799 1.0061 ⋯
796796
</span><span class="ansi-cyan-fg ansi-bold"> 1 column omitted
797797

798798
Quantiles
799799
</span><span class="ansi-cyan-fg ansi-bold"> parameters </span><span class="ansi-cyan-fg ansi-bold"> 2.5% </span><span class="ansi-cyan-fg ansi-bold"> 25.0% </span><span class="ansi-cyan-fg ansi-bold"> 50.0% </span><span class="ansi-cyan-fg ansi-bold"> 75.0% </span><span class="ansi-cyan-fg ansi-bold"> 97.5%
800800
</span><span class="ansi-bright-black-fg ansi-bold"> Symbol </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64 </span><span class="ansi-bright-black-fg ansi-bold"> Float64
801801

802-
s² 0.5424 1.0241 1.5260 2.3138 5.6869
803-
m -0.5325 0.6532 1.2176 1.6624 2.7047
802+
s² 0.5672 1.0634 1.5350 2.3455 6.3589
803+
m -0.3379 0.7036 1.1874 1.6670 2.8413
804804
</span></pre>
805805
</div>
806806
</div>

‎pr-previews/624/developers/contexts/submodel-condition/index.html‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -907,7 +907,7 @@ <h2 class="anchored" data-anchor-id="desiderata-at-the-context-level">Desiderata
907907
inner context: ConditionContext(Dict(a.x =&gt; 1.0), DynamicPPL.PrefixContext{AbstractPPL.VarName{:a, typeof(identity)}, DynamicPPL.DefaultContext}(a, DynamicPPL.DefaultContext()))</code></pre>
908908
</div>
909909
<div class="cell-output cell-output-display" data-execution_count="1">
910-
<pre><code>-0.6878723169974158</code></pre>
910+
<pre><code>0.2103964725607289</code></pre>
911911
</div>
912912
</div>
913913
<p>For the <em>inner</em> conditioning case (point (3)), the outer model is not run with any special context. The inner model will itself contain a <code>ConditionContext</code> will contain a <code>VarName</code> that is not prefixed. When we run the model, this <code>ConditionContext</code> should be then nested <em>inside</em> a <code>PrefixContext</code> to form the final evaluation context. Again, we can run the model to see this in action:</p>
@@ -918,7 +918,7 @@ <h2 class="anchored" data-anchor-id="desiderata-at-the-context-level">Desiderata
918918
inner context: DynamicPPL.PrefixContext{AbstractPPL.VarName{:a, typeof(identity)}, DynamicPPL.ConditionContext{Dict{AbstractPPL.VarName{:x, typeof(identity)}, Float64}, DynamicPPL.DefaultContext}}(a, ConditionContext(Dict(x =&gt; 1.0), DynamicPPL.DefaultContext()))</code></pre>
919919
</div>
920920
<div class="cell-output cell-output-display" data-execution_count="1">
921-
<pre><code>-1.4111234758097777</code></pre>
921+
<pre><code>0.4456119463449874</code></pre>
922922
</div>
923923
</div>
924924
<p>Putting all of the information so far together, what it means is that if we have these two inner contexts (taken from above):</p>

0 commit comments

Comments
 (0)