diff --git a/Manifest.toml b/Manifest.toml index f39fcaae7..c5d7a04ff 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "2db94c909342da49eb3ff313436b75e25977ace6" [[deps.ADTypes]] -git-tree-sha1 = "60665b326b75db6517939d0e1875850bc4a54368" +git-tree-sha1 = "27cecae79e5cc9935255f90c53bb831cc3c870d7" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.17.0" +version = "1.18.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -34,9 +34,9 @@ version = "0.5.24" [[deps.AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] -git-tree-sha1 = "e4b6a25ba2e033c74ea11720daacafbc2ab50a7e" +git-tree-sha1 = "2b33cfcb3f32819e02bf949e7546a1d59247884e" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "5.7.2" +version = "5.8.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "Random", "StatsBase"] @@ -86,9 +86,9 @@ weakdeps = ["SparseArrays", "StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "22496647c061d00217759e95a18d601c959df0c9" +git-tree-sha1 = "e5625ace51e1f11f479b24017193bc7fdfef73a2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.8.1" +version = "0.8.2" [deps.AdvancedHMC.extensions] AdvancedHMCADTypesExt = "ADTypes" @@ -177,9 +177,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "9606d7832795cbef89e06a550475be300364a8aa" +git-tree-sha1 = "dbd8c3bbbdbb5c2778f85f4422c39960eac65a42" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.19.0" +version = "7.20.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -189,6 +189,7 @@ version = "7.19.0" ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" ArrayInterfaceReverseDiffExt = "ReverseDiff" ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" @@ -202,6 +203,7 @@ version = "7.19.0" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" @@ -247,9 +249,9 @@ version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] @@ -298,10 +300,10 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "35ba30573d4f83242f1e788c87ca792c83553c9e" +git-tree-sha1 = "1f8e2022a4f6dbbe3c7b60f728647973e7b514ef" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.15.9" -weakdeps = ["ChainRules", "DistributionsAD", "EnzymeCore", "ForwardDiff", "LazyArrays", "Mooncake", "ReverseDiff", "Tracker"] +version = "0.15.10" +weakdeps = ["ChainRules", "DistributionsAD", "EnzymeCore", "ForwardDiff", "LazyArrays", "Mooncake", "ReverseDiff"] [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -311,7 +313,6 @@ weakdeps = ["ChainRules", "DistributionsAD", "EnzymeCore", "ForwardDiff", "LazyA BijectorsMooncakeExt = "Mooncake" BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" @@ -374,9 +375,9 @@ version = "1.9.0" [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "a9014924595b7a2c1dd14aac516e38fa10ada656" +git-tree-sha1 = "90740f16aef91d898424bc11c1cabada475435e0" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.3.0" +version = "1.4.0" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -492,9 +493,9 @@ version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "a656525c8b46aa6a1c76891552ed5381bb32ae7b" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.30.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -652,9 +653,9 @@ version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "fb61b4812c49343d7ef0b533ba982c46021938a6" +git-tree-sha1 = "c967271c27a95160e30432e011b58f42cd7501b5" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.7.0" +version = "1.8.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] @@ -702,15 +703,14 @@ uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" version = "0.4.0" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "1b1e070e57681d1176d99a5ec455717e24686612" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "087632db966c90079a5534e4147afea9136ca39a" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.183.2" +version = "6.190.2" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" - DiffEqBaseDistributionsExt = "Distributions" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseForwardDiffExt = ["ForwardDiff"] DiffEqBaseGTPSAExt = "GTPSA" @@ -777,9 +777,9 @@ version = "7.16.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "38989b1532a3c6e2341d52b77c5475c42c3318a8" +git-tree-sha1 = "16946a4d305607c3a4af54ff35d56f0e9444ed0e" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.6" +version = "0.7.7" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -929,9 +929,9 @@ version = "1.0.5" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "InteractiveUtils", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"] -git-tree-sha1 = "7297613272c67cb7f11969679960419c5e463974" +git-tree-sha1 = "8bd38788cad934e433f944678885d8525cccc009" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.13.68" +version = "0.13.76" [deps.Enzyme.extensions] EnzymeBFloat16sExt = "BFloat16s" @@ -950,9 +950,9 @@ version = "0.13.68" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.EnzymeCore]] -git-tree-sha1 = "8272a687bca7b5c601c0c24fc0c71bff10aafdfd" +git-tree-sha1 = "787f5e2efb33af12cc3fde313c1b0195a3f08eba" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.12" +version = "0.8.13" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -960,9 +960,9 @@ weakdeps = ["Adapt"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "a357a553f8dfd461756ff8ed66fd541bdf2d1588" +git-tree-sha1 = "440abfda8e1329662bed574250dde0dcd91f3181" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.188+0" +version = "0.0.197+0" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -978,9 +978,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d55dffd9ae73ff72f1c0482454dcf2ec6c6c4a63" +git-tree-sha1 = "7bb1361afdb33c7f2b085aa49ea8fe1b0fb14e58" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.6.5+0" +version = "2.7.1+0" [[deps.ExponentialUtilities]] deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] @@ -1015,10 +1015,10 @@ uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" version = "7.1.1+0" [[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "797762812ed063b9b94f6cc7742bc8883bb5e69e" +deps = ["AbstractFFTs", "FFTW_jll", "Libdl", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "97f08406df914023af55ade2f843c39e99c5d969" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.9.0" +version = "1.10.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1111,9 +1111,9 @@ version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "6a70198746448456524cb442b8af316927ff3e1a" +git-tree-sha1 = "173e4d8f14230a7523ae11b9a3fa9edb3e0efd78" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.13.0" +version = "1.14.0" weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -1169,9 +1169,9 @@ version = "0.16.5" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] -git-tree-sha1 = "301b5d5d731a0654825f1f2e906990f7141a106b" +git-tree-sha1 = "f85dac9a96a01087df6e3a749840015a0ca3817d" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.16.0+0" +version = "2.17.1+0" [[deps.Format]] git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" @@ -1180,9 +1180,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "910febccb28d493032495b7009dce7d7f7aee554" +git-tree-sha1 = "dc41303865a16274ecb8450c220021ce1e0cf05f" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.0.1" +version = "1.2.1" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -1276,11 +1276,17 @@ git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" uuid = "b0724c58-0f36-5564-988d-3bb0596ebc4a" version = "0.22.4+0" +[[deps.Ghostscript_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll"] +git-tree-sha1 = "38044a04637976140074d0b0621c1edf0eb531fd" +uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b" +version = "9.55.1+0" + [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "35fbd0cefb04a516104b8e183ce0df11b70a3f1a" +git-tree-sha1 = "50c11ffab2a3d50192a228c313f05b5b5dc5acb2" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.84.3+0" +version = "2.86.0+0" [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1354,9 +1360,9 @@ uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" version = "0.3.1" [[deps.InlineStrings]] -git-tree-sha1 = "8594fac023c5ce1ef78260f24d1ad18b4327b420" +git-tree-sha1 = "8f3d257792a522b4601c24a577954b0a8cd7334d" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.4" +version = "1.4.5" [deps.InlineStrings.extensions] ArrowTypesExt = "ArrowTypes" @@ -1454,9 +1460,9 @@ version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e95866623950267c1e4878846f848d94810de475" +git-tree-sha1 = "4255f0032eafd6451d707a51d5f0248b8a165e4d" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.2+0" +version = "3.1.3+0" [[deps.JuliaVariables]] deps = ["MLStyle", "NameResolution"] @@ -1465,10 +1471,10 @@ uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" version = "0.2.4" [[deps.JumpProcesses]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "SymbolicIndexingInterface", "UnPack"] -git-tree-sha1 = "f5b57507a36f05509e72120aa84d5c3747dbd70e" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "SymbolicIndexingInterface", "UnPack"] +git-tree-sha1 = "905a2a28770e23f3ed750306ef48eb8c46c3a002" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.17.0" +version = "9.19.1" weakdeps = ["Adapt", "FastBroadcast", "KernelAbstractions"] [deps.JumpProcesses.extensions] @@ -1564,10 +1570,10 @@ uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.4.0" [[deps.Latexify]] -deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "52e1296ebbde0db845b356abbbe67fb82a0a116c" +deps = ["Format", "Ghostscript_jll", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "44f93c47f9cd6c7e431f2f2091fcba8f01cd7e8f" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.9" +version = "0.16.10" [deps.Latexify.extensions] DataFramesExt = "DataFrames" @@ -1589,9 +1595,9 @@ version = "0.1.17" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "76627adb8c542c6b73f68d4bfd0aa71c9893a079" +git-tree-sha1 = "21057b6f4f5db1475e653735fda7d1de1c267b46" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.6.2" +version = "2.6.3" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1689,9 +1695,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a31572773ac1b745e0343fe5e2c8ddda7a37e997" +git-tree-sha1 = "706dfd3c0dd56ca090e86884db6eda70fa7dd4af" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.0+0" +version = "2.41.1+0" [[deps.Libtask]] deps = ["MistyClosures", "Test"] @@ -1707,9 +1713,9 @@ version = "4.7.1+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "321ccef73a96ba828cd51f2ab5b9f917fa73945a" +git-tree-sha1 = "d3c8af829abaeba27181db4acb485b18d15d89c6" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.0+0" +version = "2.41.1+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] @@ -1733,10 +1739,10 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "eaef503c581f5325d7202ebfd13298975e1269d6" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "e479c96c20e3fe6067d7ee6618839236d156f060" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.33.0" +version = "3.40.1" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1843,9 +1849,9 @@ version = "1.1.0" [[deps.Lux]] deps = ["ADTypes", "Adapt", "ArgCheck", "ArrayInterface", "ChainRulesCore", "Compat", "ConcreteStructs", "DiffResults", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "GPUArraysCore", "LinearAlgebra", "LuxCore", "LuxLib", "MLDataDevices", "MacroTools", "Markdown", "NNlib", "Optimisers", "Preferences", "Random", "Reexport", "SIMDTypes", "Setfield", "Static", "StaticArraysCore", "Statistics", "WeightInitializers"] -git-tree-sha1 = "c01b012bbf84e6d5aab7b75782a73f453d34be87" +git-tree-sha1 = "c300d2df439a343a840dd8ef6b0910ce4cafc8c6" uuid = "b2108857-7c20-44ae-9111-449ecde12c47" -version = "1.17.0" +version = "1.21.1" [deps.Lux.extensions] LuxComponentArraysExt = "ComponentArrays" @@ -1882,9 +1888,9 @@ version = "1.17.0" [[deps.LuxCore]] deps = ["Compat", "DispatchDoctor", "Random"] -git-tree-sha1 = "a72b6b530f39a87d1327b90f5def4bce48eb1a52" +git-tree-sha1 = "cf12c8eba464132e781d7e000bcc4090e2b6e115" uuid = "bb33d45b-7691-41d6-9220-0943567d0623" -version = "1.3.0" +version = "1.4.1" [deps.LuxCore.extensions] LuxCoreArrayInterfaceReverseDiffExt = ["ArrayInterface", "ReverseDiff"] @@ -1901,6 +1907,7 @@ version = "1.3.0" ArrayInterface = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" Functors = "d9f16b24-f501-4c13-a1f2-28368ffc5196" MLDataDevices = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" @@ -1910,9 +1917,9 @@ version = "1.3.0" [[deps.LuxLib]] deps = ["ArrayInterface", "CPUSummary", "ChainRulesCore", "Compat", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "KernelAbstractions", "LinearAlgebra", "LuxCore", "MLDataDevices", "Markdown", "NNlib", "Polyester", "Preferences", "Random", "Reexport", "Static", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "5d1d796c8b2878b5cad2849970c52897ff8c0271" +git-tree-sha1 = "109240d7ba4698e7eb60b11f190424b8ca018318" uuid = "82251201-b29d-42c6-8e01-566dec8acb11" -version = "1.10.2" +version = "1.11.2" [deps.LuxLib.extensions] LuxLibAppleAccelerateExt = "AppleAccelerate" @@ -1922,7 +1929,7 @@ version = "1.10.2" LuxLibLoopVectorizationExt = "LoopVectorization" LuxLibMKLExt = "MKL" LuxLibOctavianExt = ["Octavian", "LoopVectorization"] - LuxLibReactantExt = "Reactant" + LuxLibReactantExt = ["Reactant", "ReactantCore"] LuxLibReverseDiffExt = "ReverseDiff" LuxLibSLEEFPiratesExt = "SLEEFPirates" LuxLibTrackerAMDGPUExt = ["AMDGPU", "Tracker"] @@ -1939,6 +1946,7 @@ version = "1.10.2" MKL = "33e6dc65-8f57-5167-99aa-e5a354878fb2" Octavian = "6fd5a793-0b7e-452c-907f-f8bfe9c57db4" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + ReactantCore = "a3311ec8-5e00-46d5-b541-4f83e724a433" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SLEEFPirates = "476501e8-09a2-5ece-8869-fb82de89a1fa" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" @@ -1946,9 +1954,9 @@ version = "1.10.2" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "DataAPI", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "f3993c723865f670102011ef22811e2bbb0ef1a8" +git-tree-sha1 = "902175f1618baa58dc50dc2894d382bbd484adf4" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "7.2.0" +version = "7.3.0" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -1970,9 +1978,9 @@ version = "1.0.0" [[deps.MLDataDevices]] deps = ["Adapt", "Compat", "Functors", "Preferences", "Random"] -git-tree-sha1 = "0ad0d8f83ddf28a7eba28ed94d0d68015ce645b7" +git-tree-sha1 = "39bac90ff3e88e086426f05a3e97646f91088a7f" uuid = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" -version = "1.11.1" +version = "1.12.0" [deps.MLDataDevices.extensions] MLDataDevicesAMDGPUExt = "AMDGPU" @@ -2140,9 +2148,9 @@ version = "0.8.1" [[deps.Mooncake]] deps = ["ADTypes", "ChainRules", "ChainRulesCore", "DiffRules", "DispatchDoctor", "ExprTools", "FunctionWrappers", "GPUArraysCore", "Graphs", "InteractiveUtils", "LinearAlgebra", "MistyClosures", "Random", "Test"] -git-tree-sha1 = "955bad945bc815c4b48fb4d17ce39cf3ba6abcf3" +git-tree-sha1 = "bc28c3170e7c78d671ff512ca80487ce7e375bb5" uuid = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" -version = "0.4.150" +version = "0.4.160" [deps.Mooncake.extensions] MooncakeAllocCheckExt = "AllocCheck" @@ -2277,10 +2285,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DiffEqBase", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseMatrixColorings", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d2ec18c1e4eccbb70b64be2435fc3b06fbcdc0a1" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "627967f6e36aac9f5afb2fb285e33b676a6892f9" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.10.0" +version = "4.11.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -2289,7 +2297,7 @@ version = "4.10.0" NonlinearSolveMINPACKExt = "MINPACK" NonlinearSolveNLSolversExt = "NLSolvers" NonlinearSolveNLsolveExt = ["NLsolve", "LineSearches"] - NonlinearSolvePETScExt = ["PETSc", "MPI"] + NonlinearSolvePETScExt = ["PETSc", "MPI", "SparseArrays"] NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" NonlinearSolveSpeedMappingExt = "SpeedMapping" NonlinearSolveSundialsExt = "Sundials" @@ -2305,46 +2313,51 @@ version = "4.10.0" NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "1d42a315ba627ca0027d49d0efb44e3d88db24aa" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "bc0c764f8d4cbd75dc8e4968e62194495c2c6637" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "1.14.0" -weakdeps = ["BandedMatrices", "DiffEqBase", "ForwardDiff", "LineSearch", "LinearSolve", "SparseArrays", "SparseMatrixColorings"] +version = "1.16.0" +weakdeps = ["BandedMatrices", "ChainRulesCore", "Enzyme", "ForwardDiff", "LineSearch", "LinearSolve", "Mooncake", "ReverseDiff", "SparseArrays", "SparseMatrixColorings", "Tracker"] [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" - NonlinearSolveBaseDiffEqBaseExt = "DiffEqBase" + NonlinearSolveBaseChainRulesCoreExt = "ChainRulesCore" + NonlinearSolveBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] NonlinearSolveBaseForwardDiffExt = "ForwardDiff" NonlinearSolveBaseLineSearchExt = "LineSearch" NonlinearSolveBaseLinearSolveExt = "LinearSolve" + NonlinearSolveBaseMooncakeExt = "Mooncake" + NonlinearSolveBaseReverseDiffExt = "ReverseDiff" NonlinearSolveBaseSparseArraysExt = "SparseArrays" NonlinearSolveBaseSparseMatrixColoringsExt = "SparseMatrixColorings" + NonlinearSolveBaseTrackerExt = "Tracker" [[deps.NonlinearSolveFirstOrder]] -deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "3f1198ae5cbf21e84b8251a9e62fa1f888f3e4cb" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "b9702235120d1161f8041b326eccebd334340de2" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "1.7.0" +version = "1.8.0" [[deps.NonlinearSolveQuasiNewton]] -deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "40dfaf1bf74f1f700f81d0002d4dd90999598eb2" +deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] +git-tree-sha1 = "4e0e34601c6c9890aa9443003180967f75c6929d" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.8.0" +version = "1.9.0" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] NonlinearSolveQuasiNewtonForwardDiffExt = "ForwardDiff" [[deps.NonlinearSolveSpectralMethods]] -deps = ["CommonSolve", "ConcreteStructs", "DiffEqBase", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "84de5a469e119eb2c22ae07c543dc4e7f7001ee7" +deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "6c613302febe2bb408a888105d07073cf6824911" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.3.0" +version = "1.4.0" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -2439,16 +2452,16 @@ version = "0.4.6" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" [[deps.Optimization]] -deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LBFGSB", "LinearAlgebra", "Logging", "LoggingExtras", "OptimizationBase", "Printf", "ProgressLogging", "Reexport", "SciMLBase", "SparseArrays", "TerminalLoggers"] -git-tree-sha1 = "41902230755effe29a8599ea4b61dc3ffc2c952d" +deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LBFGSB", "LinearAlgebra", "Logging", "LoggingExtras", "OptimizationBase", "Printf", "ProgressLogging", "Random", "Reexport", "SciMLBase", "SparseArrays", "TerminalLoggers"] +git-tree-sha1 = "1e02b79bf6175d723a40745f622e9513253bab55" uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" -version = "4.5.0" +version = "4.7.0" [[deps.OptimizationBase]] -deps = ["ADTypes", "ArrayInterface", "DifferentiationInterface", "DocStringExtensions", "FastClosures", "LinearAlgebra", "PDMats", "Reexport", "Requires", "SciMLBase", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings"] -git-tree-sha1 = "474b2fa6de9288d34b8ad42c9c500088132621a7" +deps = ["ADTypes", "ArrayInterface", "DifferentiationInterface", "DocStringExtensions", "FastClosures", "LinearAlgebra", "PDMats", "Reexport", "SciMLBase", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings"] +git-tree-sha1 = "4f6098addb09203f35de1b21d5e668315544ff26" uuid = "bca83a33-5cc9-4baa-983d-23429ab6bcbb" -version = "2.10.0" +version = "2.11.0" [deps.OptimizationBase.extensions] OptimizationEnzymeExt = "Enzyme" @@ -2474,15 +2487,15 @@ version = "2.10.0" [[deps.OptimizationNLopt]] deps = ["NLopt", "Optimization", "Random", "Reexport"] -git-tree-sha1 = "da55bae039168c0ef977bd5926cd5208c6cd13cf" +git-tree-sha1 = "83e469a5b058250e95121afeea71da14034b24a4" uuid = "4e6fcdb7-1186-4e1f-a706-475e75c168bb" -version = "0.3.2" +version = "0.3.3" [[deps.OptimizationOptimJL]] deps = ["Optim", "Optimization", "PrecompileTools", "Reexport", "SparseArrays"] -git-tree-sha1 = "6f228118b81ce4e849091ee0d00805f2ecb18f54" +git-tree-sha1 = "a6194340cb4f7d61cec9d6f605848d6a187c64b6" uuid = "36348300-93cb-4f02-beb5-3c3902f8871e" -version = "0.4.3" +version = "0.4.4" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2496,10 +2509,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqAdamsBashforthMoulton", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqExplicitRK", "OrdinaryDiffEqExponentialRK", "OrdinaryDiffEqExtrapolation", "OrdinaryDiffEqFIRK", "OrdinaryDiffEqFeagin", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqHighOrderRK", "OrdinaryDiffEqIMEXMultistep", "OrdinaryDiffEqLinear", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqLowStorageRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqNordsieck", "OrdinaryDiffEqPDIRK", "OrdinaryDiffEqPRK", "OrdinaryDiffEqQPRK", "OrdinaryDiffEqRKN", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqSSPRK", "OrdinaryDiffEqStabilizedIRK", "OrdinaryDiffEqStabilizedRK", "OrdinaryDiffEqSymplecticRK", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "Static", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "55c21fdb4626037cdbcb04fec3afa192345a24de" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqAdamsBashforthMoulton", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqExplicitRK", "OrdinaryDiffEqExponentialRK", "OrdinaryDiffEqExtrapolation", "OrdinaryDiffEqFIRK", "OrdinaryDiffEqFeagin", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqHighOrderRK", "OrdinaryDiffEqIMEXMultistep", "OrdinaryDiffEqLinear", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqLowStorageRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqNordsieck", "OrdinaryDiffEqPDIRK", "OrdinaryDiffEqPRK", "OrdinaryDiffEqQPRK", "OrdinaryDiffEqRKN", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqSSPRK", "OrdinaryDiffEqStabilizedIRK", "OrdinaryDiffEqStabilizedRK", "OrdinaryDiffEqSymplecticRK", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "Static", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] +git-tree-sha1 = "89cd4e81d7a668f8858fba6779212f41a0360260" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.101.0" +version = "6.102.1" [[deps.OrdinaryDiffEqAdamsBashforthMoulton]] deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqLowOrderRK", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] @@ -2515,9 +2528,9 @@ version = "1.10.1" [[deps.OrdinaryDiffEqCore]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleUnPack", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "e579c9a4f9102e82da3d97c349a74d6bc11cf8dc" +git-tree-sha1 = "688c717e8eee84dcfef02ddf71c8028215b329ca" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "1.30.0" +version = "1.34.0" weakdeps = ["EnzymeCore", "Mooncake"] [deps.OrdinaryDiffEqCore.extensions] @@ -2531,10 +2544,14 @@ uuid = "50262376-6c5a-4cf5-baba-aaf4f84d72d7" version = "1.8.0" [[deps.OrdinaryDiffEqDifferentiation]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseMatrixColorings", "StaticArrayInterface", "StaticArrays"] -git-tree-sha1 = "4c270747152db513dd80bfd5f2f9df48befff28a" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArrayInterface", "StaticArrays"] +git-tree-sha1 = "1fff7356ccb79ca1b1ff3276135fda68d4d661be" uuid = "4302a76b-040a-498a-8c04-15b101fed76b" -version = "1.14.0" +version = "1.16.0" +weakdeps = ["SparseArrays"] + + [deps.OrdinaryDiffEqDifferentiation.extensions] + OrdinaryDiffEqDifferentiationSparseArraysExt = "SparseArrays" [[deps.OrdinaryDiffEqExplicitRK]] deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] @@ -2550,9 +2567,9 @@ version = "1.8.0" [[deps.OrdinaryDiffEqExtrapolation]] deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastPower", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "ee2cba2533e9faf71b09a319a910d4886931e7a6" +git-tree-sha1 = "9e1b11cf448a2c1bca640103c1c848a20aa2f967" uuid = "becaefa8-8ca2-5cf9-886d-c06f3d2bd2c4" -version = "1.8.0" +version = "1.9.0" [[deps.OrdinaryDiffEqFIRK]] deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastGaussQuadrature", "FastPower", "LinearAlgebra", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators"] @@ -2598,9 +2615,9 @@ version = "1.6.0" [[deps.OrdinaryDiffEqLowStorageRK]] deps = ["Adapt", "DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "StaticArrays"] -git-tree-sha1 = "9291cdfd2e8c91e900c48d71d76618de47daeede" +git-tree-sha1 = "e6bd0a7fb6643a57b06a90415608a81aaf7bd772" uuid = "b0944070-b475-4768-8dec-fb6eb410534d" -version = "1.6.0" +version = "1.7.0" [[deps.OrdinaryDiffEqNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "StaticArrays"] @@ -2640,9 +2657,9 @@ version = "1.5.0" [[deps.OrdinaryDiffEqRosenbrock]] deps = ["ADTypes", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "a06c1263d71ea42a1881b4d49c8a087035d4a3ff" +git-tree-sha1 = "f60d7201a2ceaa7e9a406942f0a2fa3e920715fa" uuid = "43230ef6-c299-4910-a778-202eb28ce4ce" -version = "1.16.1" +version = "1.18.0" [[deps.OrdinaryDiffEqSDIRK]] deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] @@ -2652,9 +2669,9 @@ version = "1.7.0" [[deps.OrdinaryDiffEqSSPRK]] deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "StaticArrays"] -git-tree-sha1 = "af955c61407631d281dd4c2e8331cdfea1af49be" +git-tree-sha1 = "3bce87977264916bd92455754ab336faec68bf8a" uuid = "669c94d9-1f4b-4b64-b377-1aa079aa2388" -version = "1.6.0" +version = "1.7.0" [[deps.OrdinaryDiffEqStabilizedIRK]] deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqStabilizedRK", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays"] @@ -2705,9 +2722,9 @@ weakdeps = ["Requires", "TOML"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "275a9a6d85dc86c24d03d1837a0010226a96f540" +git-tree-sha1 = "1f7f9bbd5f7a2e5a9f7d96e51c9754454ea7f60b" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.56.3+0" +version = "1.56.4+0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -2750,9 +2767,9 @@ version = "1.4.3" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "9a9216c0cf706cb2cc58fd194878180e3e51e8c0" +git-tree-sha1 = "bfe839e9668f0c58367fb62d8757315c0eac8777" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.40.18" +version = "1.40.20" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -2800,9 +2817,9 @@ version = "0.2.4" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] -git-tree-sha1 = "520070df581845686c8c488b6dadce6b2c316856" +git-tree-sha1 = "c05b4c6325262152483a1ecb6c69846d2e01727b" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.32" +version = "0.4.34" weakdeps = ["ForwardDiff", "ReverseDiff", "SparseConnectivityTracer"] [deps.PreallocationTools.extensions] @@ -2846,9 +2863,9 @@ version = "0.1.5" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] -git-tree-sha1 = "13c5103482a8ed1536a54c08d0e742ae3dca2d42" +git-tree-sha1 = "fbb92c6c56b34e1a2c4c36058f68f332bec840e7" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.10.4" +version = "1.11.0" [[deps.PtrArrays]] git-tree-sha1 = "1d36ef11a9aaf1e8b74dacc6a731dd1de8fd493d" @@ -3031,9 +3048,9 @@ version = "0.5.1+0" [[deps.Roots]] deps = ["Accessors", "CommonSolve", "Printf"] -git-tree-sha1 = "668e411c0616a70860249b4c96e5d35296631a1d" +git-tree-sha1 = "8a433b1ede5e9be9a7ba5b1cc6698daa8d718f1d" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.2.8" +version = "2.2.10" [deps.Roots.extensions] RootsChainRulesCoreExt = "ChainRulesCore" @@ -3041,6 +3058,7 @@ version = "2.2.8" RootsIntervalRootFindingExt = "IntervalRootFinding" RootsSymPyExt = "SymPy" RootsSymPyPythonCallExt = "SymPyPythonCall" + RootsUnitfulExt = "Unitful" [deps.Roots.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" @@ -3048,6 +3066,7 @@ version = "2.2.8" IntervalRootFinding = "d2bf35a9-74e0-55ec-b149-d360ff49b807" SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -3066,59 +3085,64 @@ version = "0.1.0" [[deps.SSMProblems]] deps = ["AbstractMCMC", "Distributions", "Random"] -git-tree-sha1 = "b00814e67e8aacda2073865a3832e6cc378ea504" +git-tree-sha1 = "5dd0431563784b468db06335ce8777653092d621" uuid = "26aad666-b158-4e64-9d35-0e672562fa48" -version = "0.5.1" - -[[deps.SafeTestsets]] -git-tree-sha1 = "81ec49d645af090901120a1542e67ecbbe044db3" -uuid = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f" -version = "0.1.0" +version = "0.5.2" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "4398bda451c3c7aaca91a8077bcba227fe236d72" +git-tree-sha1 = "16fa030fb4bd4df373a677eca0460c3eee791ab2" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.111.1" +version = "2.120.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseDistributionsExt = "Distributions" + SciMLBaseEnzymeExt = "Enzyme" + SciMLBaseForwardDiffExt = "ForwardDiff" SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" + SciMLBaseMeasurementsExt = "Measurements" + SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + SciMLBaseMooncakeExt = "Mooncake" SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" + SciMLBaseReverseDiffExt = "ReverseDiff" + SciMLBaseTrackerExt = "Tracker" SciMLBaseZygoteExt = ["Zygote", "ChainRulesCore"] [deps.SciMLBase.weakdeps] ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "3414071e3458f3065de7fa5aed55283b236b4907" +git-tree-sha1 = "a273b291c90909ba6fe08402dd68e09aae423008" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.8" - -[[deps.SciMLLogging]] -deps = ["DocStringExtensions", "Logging", "LoggingExtras", "Moshi", "SafeTestsets"] -git-tree-sha1 = "e8a13b37734bc601500cd29336f114f67c7fb353" -uuid = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" -version = "1.0.0" +version = "0.1.11" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools"] -git-tree-sha1 = "aea915a39b547c48a18ee041120db1ae8df5a691" +git-tree-sha1 = "024d829102878141aaee5cf8f8288bcabd2f57a0" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.5.0" +version = "1.7.2" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -3148,9 +3172,9 @@ version = "3.0.0" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] -git-tree-sha1 = "7f44eef6b1d284465fafc66baf4d9bdcc239a15b" +git-tree-sha1 = "c3b2323466378a2ba15bea4b2f73b081e022f473" uuid = "7e506255-f358-4e82-b7e4-beb19740aa63" -version = "1.4.0" +version = "1.5.0" [[deps.Scratch]] deps = ["Dates"] @@ -3202,14 +3226,13 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "09d986e27a606f172c5b6cffbd8b8b2f10bf1c75" +git-tree-sha1 = "782c67176b473abf62a6786399c4b7ddcc1a2d77" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.7.0" -weakdeps = ["ChainRulesCore", "DiffEqBase", "ReverseDiff", "Tracker"] +version = "2.8.0" +weakdeps = ["ChainRulesCore", "ReverseDiff", "Tracker"] [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" - SimpleNonlinearSolveDiffEqBaseExt = "DiffEqBase" SimpleNonlinearSolveReverseDiffExt = "ReverseDiff" SimpleNonlinearSolveTrackerExt = "Tracker" @@ -3241,12 +3264,13 @@ version = "1.11.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "7bd2b8981cc57adcf5cf1add282aba2713a7058f" +git-tree-sha1 = "3c3a42a29f696f16273741ffe589b4003f539088" uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" -version = "1.0.0" -weakdeps = ["LogExpFunctions", "NNlib", "NaNMath", "SpecialFunctions"] +version = "1.1.0" +weakdeps = ["ChainRulesCore", "LogExpFunctions", "NNlib", "NaNMath", "SpecialFunctions"] [deps.SparseConnectivityTracer.extensions] + SparseConnectivityTracerChainRulesCoreExt = "ChainRulesCore" SparseConnectivityTracerLogExpFunctionsExt = "LogExpFunctions" SparseConnectivityTracerNNlibExt = "NNlib" SparseConnectivityTracerNaNMathExt = "NaNMath" @@ -3315,9 +3339,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "cbea8a6bd7bed51b1619658dec70035e07b8502f" +git-tree-sha1 = "b8693004b385c842357406e3af647701fe783f98" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.14" +version = "1.9.15" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -3370,9 +3394,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "728d276a5adc2f1cbb800eec4b63d0a8221024b4" +git-tree-sha1 = "85a43f6fc30dd80c61342519ca2fc36dac912eae" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.7.5" +version = "0.7.6" [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] @@ -3388,15 +3412,15 @@ version = "2.5.0" [[deps.StochasticDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FastPower", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "StaticArrays", "UnPack"] -git-tree-sha1 = "c3a55a2a1e180e249a0550d30a58c700487aa7ef" +git-tree-sha1 = "d9540e35a902512f6c86a6817120eddc8912f651" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.81.0" +version = "6.82.0" [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "f35f6ab602df8413a50c4a25ca14de821e8605fb" +git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.7" +version = "0.5.8" [[deps.Strided]] deps = ["LinearAlgebra", "StridedViews", "TupleTools"] @@ -3470,9 +3494,9 @@ version = "5.2.3+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "93104ca226670c0cb92ba8bc6998852ad55a2d4c" +git-tree-sha1 = "b19cf024a2b11d72bef7c74ac3d1cbe86ec9e4ed" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.43" +version = "0.3.44" weakdeps = ["PrettyTables"] [deps.SymbolicIndexingInterface.extensions] @@ -3575,9 +3599,9 @@ weakdeps = ["PDMats"] [[deps.Tracy]] deps = ["ExprTools", "LibTracyClient_jll", "Libdl"] -git-tree-sha1 = "91dbaee0f50faa4357f7e9fc69442c7b6364dfe5" +git-tree-sha1 = "73e3ff50fd3990874c59fef0f35d10644a1487bc" uuid = "e689c965-62c8-4b79-b2c5-8359227902fd" -version = "0.1.5" +version = "0.1.6" [deps.Tracy.extensions] TracyProfilerExt = "TracyProfiler_jll" @@ -3591,10 +3615,10 @@ uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.11.3" [[deps.Transducers]] -deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] -git-tree-sha1 = "7deeab4ff96b85c5f72c824cae53a1398da3d1cb" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.84" +version = "0.4.85" [deps.Transducers.extensions] TransducersAdaptExt = "Adapt" @@ -3718,27 +3742,23 @@ version = "1.4.2" [[deps.WeightInitializers]] deps = ["ArgCheck", "ConcreteStructs", "GPUArraysCore", "LinearAlgebra", "Random", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "dd2e8eb0120c12eed3446cedee395ca7ac42a5db" +git-tree-sha1 = "2fe6d8bd39dc8d1f575963eef137f77bd47200c9" uuid = "d49dbf32-c5c2-4618-8acc-27bb2598ef2d" -version = "1.1.4" +version = "1.2.0" [deps.WeightInitializers.extensions] - WeightInitializersAMDGPUExt = ["AMDGPU", "GPUArrays"] - WeightInitializersCUDAExt = ["CUDA", "GPUArrays"] + WeightInitializersAMDGPUExt = "AMDGPU" + WeightInitializersCUDAExt = "CUDA" WeightInitializersChainRulesCoreExt = "ChainRulesCore" WeightInitializersGPUArraysExt = "GPUArrays" - WeightInitializersMetalExt = ["Metal", "GPUArrays"] WeightInitializersReactantExt = "Reactant" - WeightInitializersoneAPIExt = ["oneAPI", "GPUArrays"] [deps.WeightInitializers.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" - oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] diff --git a/_quarto.yml b/_quarto.yml index 47c5159f3..ad8ca598a 100644 --- a/_quarto.yml +++ b/_quarto.yml @@ -205,7 +205,7 @@ format:
-

Turing is created by Hong Ge, and maintained by the core team of developers and contributors.
© 2025 The Turing Project Contributors. MIT License.

+

Turing.jl was created by Hong Ge, and maintained by the core team of developers and contributors.
© 2025 The Turing Project Contributors. MIT License.

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