diff --git a/Manifest.toml b/Manifest.toml index d2970bf3c..2243583a9 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -34,15 +34,15 @@ version = "0.5.24" [[deps.AbstractMCMC]] deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] -git-tree-sha1 = "2b33cfcb3f32819e02bf949e7546a1d59247884e" +git-tree-sha1 = "349b876950079105eafe19c5424eea3480ad7a84" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "5.8.0" +version = "5.8.2" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] -git-tree-sha1 = "3a9c1e6e7418494454260b0c8efd7b00fca251bc" +git-tree-sha1 = "01107828b7367278491629b294a018e718697c3e" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.13.1" +version = "0.13.2" weakdeps = ["Distributions"] [deps.AbstractPPL.extensions] @@ -79,9 +79,9 @@ version = "0.1.42" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "f7817e2e585aa6d924fd714df1e2a84be7896c60" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.3.0" +version = "4.4.0" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -215,9 +215,9 @@ version = "7.20.0" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "120e392af69350960b1d3b89d41dcc1d66543858" +git-tree-sha1 = "355ab2d61069927d4247cd69ad0e1f140b31e30d" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.11.2" +version = "1.12.0" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -259,9 +259,9 @@ version = "0.4.8" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "e35c672b239c5105f597963c33e740eeb46cf0ab" +git-tree-sha1 = "d5133c6b1326fe10042e41ddf1d46b0a1a4011f4" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.9.4" +version = "1.9.5" [deps.BandedMatrices.extensions] BandedMatricesSparseArraysExt = "SparseArrays" @@ -379,9 +379,9 @@ version = "1.9.0" [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "90740f16aef91d898424bc11c1cabada475435e0" +git-tree-sha1 = "57f9f59bec88ce80cd3e46efc39f126395789bb0" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.4.0" +version = "1.5.0" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -442,9 +442,9 @@ version = "0.10.8" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "224f9dc510986549c8139def08e06f78c562514d" +git-tree-sha1 = "3b704353e517a957323bd3ac70fa7b669b5f48d4" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.72.5" +version = "1.72.6" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] @@ -550,9 +550,9 @@ version = "1.0.0" [[deps.Compat]] deps = ["TOML", "UUIDs"] -git-tree-sha1 = "0037835448781bb46feb39866934e243886d756a" +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.18.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -746,10 +746,14 @@ version = "6.190.2" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqCallbacks]] -deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "397ef6fffcf418ba55264ba785b032b8a136903b" +deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "1ff173280c597b66c65bb6be3fcf56c09c9f1394" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.9.0" +version = "4.10.0" +weakdeps = ["Functors"] + + [deps.DiffEqCallbacks.extensions] + DiffEqCallbacksFunctorsExt = "Functors" [[deps.DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] @@ -781,9 +785,9 @@ version = "7.16.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "16946a4d305607c3a4af54ff35d56f0e9444ed0e" +git-tree-sha1 = "cee1700673af54db57bd1c7fb834ad4ff31309a0" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.7" +version = "0.7.8" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -858,9 +862,9 @@ version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "3e6d038b77f22791b8e3472b7c633acea1ecac06" +git-tree-sha1 = "3bc002af51045ca3b47d2e1787d6ce02e68b943a" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.120" +version = "0.25.122" weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] @@ -898,10 +902,10 @@ uuid = "bbc10e6e-7c05-544b-b16e-64fede858acb" version = "3.5.1" [[deps.DynamicPPL]] -deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Chairmarks", "Compat", "ConstructionBase", "DifferentiationInterface", "Distributions", "DocStringExtensions", "InteractiveUtils", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Printf", "Random", "Requires", "Statistics", "Test"] -git-tree-sha1 = "65649377104973412c10fb00ebc2f8430dcf8b93" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Chairmarks", "Compat", "ConstructionBase", "DifferentiationInterface", "Distributions", "DocStringExtensions", "InteractiveUtils", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Printf", "Random", "Statistics", "Test"] +git-tree-sha1 = "27884b501e0f31c68f75181151617b77e6ac0263" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.37.2" +version = "0.37.5" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -909,6 +913,7 @@ version = "0.37.2" DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLJETExt = ["JET"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLMarginalLogDensitiesExt = ["MarginalLogDensities"] DynamicPPLMooncakeExt = ["Mooncake"] [deps.DynamicPPL.weakdeps] @@ -918,6 +923,7 @@ version = "0.37.2" JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + MarginalLogDensities = "f0c3360a-fb8d-11e9-1194-5521fd7ee392" Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.EllipticalSliceSampling]] @@ -933,30 +939,33 @@ version = "1.0.5" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "InteractiveUtils", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"] -git-tree-sha1 = "8bd38788cad934e433f944678885d8525cccc009" +git-tree-sha1 = "c30c4f0f9c3e769170fe938320097909561dda9c" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.13.76" +version = "0.13.85" [deps.Enzyme.extensions] EnzymeBFloat16sExt = "BFloat16s" EnzymeChainRulesCoreExt = "ChainRulesCore" + EnzymeDynamicPPLExt = ["ADTypes", "DynamicPPL"] EnzymeGPUArraysCoreExt = "GPUArraysCore" EnzymeLogExpFunctionsExt = "LogExpFunctions" EnzymeSpecialFunctionsExt = "SpecialFunctions" EnzymeStaticArraysExt = "StaticArrays" [deps.Enzyme.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DynamicPPL = "366bfd00-2699-11ea-058f-f148b4cae6d8" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.EnzymeCore]] -git-tree-sha1 = "787f5e2efb33af12cc3fde313c1b0195a3f08eba" +git-tree-sha1 = "e059db5d02720ae826445f5ce2fdfb3d53236b87" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.13" +version = "0.8.14" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -964,9 +973,9 @@ weakdeps = ["Adapt"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "440abfda8e1329662bed574250dde0dcd91f3181" +git-tree-sha1 = "b4168be5b9f7fe3448abc307300202e7c93261df" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.197+0" +version = "0.0.203+0" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1090,9 +1099,9 @@ version = "1.1.3" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "b66970a70db13f45b7e57fbda1736e1cf72174ea" +git-tree-sha1 = "d60eb76f37d7e5a40cc2e7c36974d864b82dc802" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.17.0" +version = "1.17.1" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -1252,9 +1261,9 @@ version = "0.2.0" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "Tracy", "UUIDs"] -git-tree-sha1 = "eb1e212e12cc058fa16712082d44be499d23638c" +git-tree-sha1 = "9a8b92a457f55165923fcfe48997b7b93b712fca" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "1.6.1" +version = "1.7.2" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] @@ -1270,9 +1279,9 @@ version = "0.73.17+0" [[deps.GenericSchur]] deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "f88e0ba1f6b42121a7c1dfe93a9687d8e164c91b" +git-tree-sha1 = "a694e2a57394e409f7a11ee0977362a9fafcb8c7" uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.5" +version = "0.5.6" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -1311,9 +1320,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "ed5e9c58612c4e081aecdb6e1a479e18462e041e" +git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.17" +version = "1.10.19" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] @@ -1388,15 +1397,19 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" version = "1.11.0" [[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "65d505fa4c0d7072990d659ef3fc086eb6da8208" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.15.1" -weakdeps = ["Unitful"] +version = "0.16.2" [deps.Interpolations.extensions] + InterpolationsForwardDiffExt = "ForwardDiff" InterpolationsUnitfulExt = "Unitful" + [deps.Interpolations.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.IntervalSets]] git-tree-sha1 = "5fbb102dcb8b1a858111ae81d56682376130517d" uuid = "8197267c-284f-5f27-9208-e0e47529a953" @@ -1510,9 +1523,9 @@ version = "0.10.65" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "b94257a1a8737099ca40bc7271a8b374033473ed" +git-tree-sha1 = "d1fc961038207e43982851e57ee257adc37be5e8" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.10.1" +version = "0.10.2" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1534,9 +1547,9 @@ version = "4.0.1+0" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] -git-tree-sha1 = "9c7c721cfd800d87d48c745d8bfb65144f0a91df" +git-tree-sha1 = "ce8614210409eaa54ed5968f4b50aa96da7ae543" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "9.4.2" +version = "9.4.4" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1546,9 +1559,9 @@ version = "9.4.2" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "2ea068aac1e7f0337d381b0eae3110581e3f3216" +git-tree-sha1 = "8e76807afb59ebb833e9b131ebf1a8c006510f33" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.37+2" +version = "0.0.38+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1599,9 +1612,9 @@ version = "0.1.17" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "21057b6f4f5db1475e653735fda7d1de1c267b46" +git-tree-sha1 = "79ee64f6ba0a5a49930f51c86f60d7526b5e12c8" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.6.3" +version = "2.8.0" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1699,27 +1712,27 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "706dfd3c0dd56ca090e86884db6eda70fa7dd4af" +git-tree-sha1 = "3acf07f130a76f87c041cfb2ff7d7284ca67b072" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.1+0" +version = "2.41.2+0" [[deps.Libtask]] deps = ["MistyClosures", "Test"] -git-tree-sha1 = "6a9b56c32b39c6e45f8265cfd3ce971c3a8f7b75" +git-tree-sha1 = "6c4f536cdba06a5280d308168cca990d95b50b83" uuid = "6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f" -version = "0.9.4" +version = "0.9.5" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "4ab7581296671007fc33f07a721631b8855f4b1d" +git-tree-sha1 = "f04133fe05eff1667d2054c53d59f9122383fe05" uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.7.1+0" +version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d3c8af829abaeba27181db4acb485b18d15d89c6" +git-tree-sha1 = "2a7a12fc0a4e7fb773450d17975322aa77142106" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.1+0" +version = "2.41.2+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] @@ -1743,10 +1756,10 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "e479c96c20e3fe6067d7ee6618839236d156f060" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "1c597eceb5ead73dae17ffa4dcc1160e3e4da1f3" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.40.1" +version = "3.28.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1845,9 +1858,9 @@ version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3" +git-tree-sha1 = "f00544d95982ea270145636c181ceda21c4e2575" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.1.0" +version = "1.2.0" [[deps.Lux]] deps = ["ADTypes", "Adapt", "ArgCheck", "ArrayInterface", "ChainRulesCore", "Compat", "ConcreteStructs", "DiffResults", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "GPUArraysCore", "LinearAlgebra", "LuxCore", "LuxLib", "MLDataDevices", "MacroTools", "Markdown", "NNlib", "Optimisers", "Preferences", "Random", "Reexport", "SIMDTypes", "Setfield", "Static", "StaticArraysCore", "Statistics", "WeightInitializers"] @@ -1889,10 +1902,10 @@ version = "1.21.1" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.LuxCore]] -deps = ["Compat", "DispatchDoctor", "Random"] -git-tree-sha1 = "cf12c8eba464132e781d7e000bcc4090e2b6e115" +deps = ["DispatchDoctor", "Random", "SciMLPublic"] +git-tree-sha1 = "ee3794a2ca3022bc066b5fb87b135c1d5f3b1cb7" uuid = "bb33d45b-7691-41d6-9220-0943567d0623" -version = "1.4.1" +version = "1.4.2" [deps.LuxCore.extensions] LuxCoreArrayInterfaceReverseDiffExt = ["ArrayInterface", "ReverseDiff"] @@ -1918,17 +1931,17 @@ version = "1.4.1" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.LuxLib]] -deps = ["ArrayInterface", "CPUSummary", "ChainRulesCore", "Compat", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "KernelAbstractions", "LinearAlgebra", "LuxCore", "MLDataDevices", "Markdown", "NNlib", "Polyester", "Preferences", "Random", "Reexport", "Static", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "109240d7ba4698e7eb60b11f190424b8ca018318" +deps = ["ArrayInterface", "CPUSummary", "ChainRulesCore", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "KernelAbstractions", "LinearAlgebra", "LuxCore", "MLDataDevices", "Markdown", "NNlib", "Preferences", "Random", "Reexport", "SciMLPublic", "Static", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "2f80ab5ff577e247b5dc2df1a726e11aff5e78a0" uuid = "82251201-b29d-42c6-8e01-566dec8acb11" -version = "1.11.2" +version = "1.12.1" [deps.LuxLib.extensions] LuxLibAppleAccelerateExt = "AppleAccelerate" LuxLibBLISBLASExt = "BLISBLAS" LuxLibCUDAExt = "CUDA" LuxLibEnzymeExt = "Enzyme" - LuxLibLoopVectorizationExt = "LoopVectorization" + LuxLibLoopVectorizationExt = ["LoopVectorization", "Polyester"] LuxLibMKLExt = "MKL" LuxLibOctavianExt = ["Octavian", "LoopVectorization"] LuxLibReactantExt = ["Reactant", "ReactantCore"] @@ -1947,6 +1960,7 @@ version = "1.11.2" LoopVectorization = "bdcacae8-1622-11e9-2a5c-532679323890" MKL = "33e6dc65-8f57-5167-99aa-e5a354878fb2" Octavian = "6fd5a793-0b7e-452c-907f-f8bfe9c57db4" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" ReactantCore = "a3311ec8-5e00-46d5-b541-4f83e724a433" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" @@ -1956,9 +1970,9 @@ version = "1.11.2" [[deps.MCMCChains]] deps = ["AbstractMCMC", "AxisArrays", "DataAPI", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "902175f1618baa58dc50dc2894d382bbd484adf4" +git-tree-sha1 = "e31382401a6fb7f01b9ad4025c04fefb4ad0bcb8" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "7.3.0" +version = "7.5.0" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] @@ -1979,10 +1993,10 @@ uuid = "c2834f40-e789-41da-a90e-33b280584a8c" version = "1.0.0" [[deps.MLDataDevices]] -deps = ["Adapt", "Compat", "Functors", "Preferences", "Random"] -git-tree-sha1 = "39bac90ff3e88e086426f05a3e97646f91088a7f" +deps = ["Adapt", "Functors", "Preferences", "Random", "SciMLPublic"] +git-tree-sha1 = "f5c0536d7bcd78610c5195398e37ce2ab8fd8789" uuid = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" -version = "1.12.0" +version = "1.13.0" [deps.MLDataDevices.extensions] MLDataDevicesAMDGPUExt = "AMDGPU" @@ -2081,9 +2095,9 @@ version = "1.11.0" [[deps.MatrixFactorizations]] deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] -git-tree-sha1 = "16a726dba99685d9e94c8d0a8f655383121fc608" +git-tree-sha1 = "5d094d4d7887b1d75abccf960ae104a4428e948e" uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" -version = "3.0.1" +version = "3.1.0" weakdeps = ["BandedMatrices"] [deps.MatrixFactorizations.extensions] @@ -2149,20 +2163,21 @@ uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" version = "0.8.1" [[deps.Mooncake]] -deps = ["ADTypes", "ChainRules", "ChainRulesCore", "DiffRules", "DispatchDoctor", "ExprTools", "FunctionWrappers", "GPUArraysCore", "Graphs", "InteractiveUtils", "LinearAlgebra", "MistyClosures", "Random", "Test"] -git-tree-sha1 = "bc28c3170e7c78d671ff512ca80487ce7e375bb5" +deps = ["ADTypes", "ChainRules", "ChainRulesCore", "DispatchDoctor", "ExprTools", "Graphs", "LinearAlgebra", "MistyClosures", "Random", "Test"] +git-tree-sha1 = "a3e24f5887c52d386cb012a7d53a05afabe5a5e7" uuid = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" -version = "0.4.160" +version = "0.4.171" [deps.Mooncake.extensions] MooncakeAllocCheckExt = "AllocCheck" MooncakeCUDAExt = "CUDA" MooncakeDynamicExpressionsExt = "DynamicExpressions" MooncakeFluxExt = "Flux" + MooncakeFunctionWrappersExt = "FunctionWrappers" MooncakeJETExt = "JET" MooncakeLuxLibExt = ["LuxLib", "MLDataDevices", "Static"] MooncakeLuxLibSLEEFPiratesExtension = ["LuxLib", "SLEEFPirates"] - MooncakeNNlibExt = "NNlib" + MooncakeNNlibExt = ["NNlib", "GPUArraysCore"] MooncakeSpecialFunctionsExt = "SpecialFunctions" [deps.Mooncake.weakdeps] @@ -2170,6 +2185,8 @@ version = "0.4.160" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" DynamicExpressions = "a40a106e-89c9-4ca8-8020-a735e8728b6b" Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + FunctionWrappers = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" LuxLib = "82251201-b29d-42c6-8e01-566dec8acb11" MLDataDevices = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" @@ -2266,10 +2283,10 @@ uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391" version = "0.1.5" [[deps.NamedArrays]] -deps = ["Combinatorics", "DataStructures", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "Random", "Requires", "SparseArrays", "Statistics"] -git-tree-sha1 = "b0219babbb69e4f0b292a11ad7f33520bdfcea8f" +deps = ["Combinatorics", "DelimitedFiles", "InvertedIndices", "LinearAlgebra", "OrderedCollections", "Random", "Requires", "SparseArrays", "Statistics"] +git-tree-sha1 = "33d258318d9e049d26c02ca31b4843b2c851c0b0" uuid = "86f7a689-2022-50b4-a561-43c23ac3c673" -version = "0.10.4" +version = "0.10.5" [[deps.NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -2288,9 +2305,9 @@ version = "1.2.0" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "627967f6e36aac9f5afb2fb285e33b676a6892f9" +git-tree-sha1 = "1d091cfece012662b06d25c792b3a43a0804c47b" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.11.0" +version = "4.12.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -2321,9 +2338,9 @@ version = "4.11.0" [[deps.NonlinearSolveBase]] deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "bc0c764f8d4cbd75dc8e4968e62194495c2c6637" +git-tree-sha1 = "9dba8e7ccfaf4c10b3a3b4cc52abf639f8558efd" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "1.16.0" +version = "2.0.0" weakdeps = ["BandedMatrices", "ChainRulesCore", "Enzyme", "ForwardDiff", "LineSearch", "LinearSolve", "Mooncake", "ReverseDiff", "SparseArrays", "SparseMatrixColorings", "Tracker"] [deps.NonlinearSolveBase.extensions] @@ -2341,15 +2358,15 @@ weakdeps = ["BandedMatrices", "ChainRulesCore", "Enzyme", "ForwardDiff", "LineSe [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "b9702235120d1161f8041b326eccebd334340de2" +git-tree-sha1 = "01c48c37ba47721ec6489a1668ab3bb1f5b603c0" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "1.8.0" +version = "1.9.0" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "4e0e34601c6c9890aa9443003180967f75c6929d" +git-tree-sha1 = "a233b7bbb32426170b238e2e2b82b0f9f1c5caba" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.9.0" +version = "1.10.0" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -2357,9 +2374,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "6c613302febe2bb408a888105d07073cf6824911" +git-tree-sha1 = "139bf9211930a829703481b3ffd86b1ab309cd07" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.4.0" +version = "1.5.0" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -2415,9 +2432,9 @@ version = "1.5.0" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "2ae7d4ddec2e13ad3bddf5c0796f7547cf682391" +git-tree-sha1 = "f19301ae653233bc88b1810ae908194f07f8db9d" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.2+0" +version = "3.5.4+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -2455,15 +2472,15 @@ version = "0.4.6" [[deps.Optimization]] deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LBFGSB", "LinearAlgebra", "Logging", "LoggingExtras", "OptimizationBase", "Printf", "ProgressLogging", "Random", "Reexport", "SciMLBase", "SparseArrays", "TerminalLoggers"] -git-tree-sha1 = "1e02b79bf6175d723a40745f622e9513253bab55" +git-tree-sha1 = "fa2449ce34cc1d7b2191bad4d3356a5376412288" uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" -version = "4.7.0" +version = "4.8.0" [[deps.OptimizationBase]] deps = ["ADTypes", "ArrayInterface", "DifferentiationInterface", "DocStringExtensions", "FastClosures", "LinearAlgebra", "PDMats", "Reexport", "SciMLBase", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings"] -git-tree-sha1 = "4f6098addb09203f35de1b21d5e668315544ff26" +git-tree-sha1 = "3da3daaceafec5e49cac1920124e8d7430e79d83" uuid = "bca83a33-5cc9-4baa-983d-23429ab6bcbb" -version = "2.11.0" +version = "2.12.0" [deps.OptimizationBase.extensions] OptimizationEnzymeExt = "Enzyme" @@ -2489,15 +2506,15 @@ version = "2.11.0" [[deps.OptimizationNLopt]] deps = ["NLopt", "Optimization", "Random", "Reexport"] -git-tree-sha1 = "83e469a5b058250e95121afeea71da14034b24a4" +git-tree-sha1 = "49d76b9da5210991366ff9b685287a412f6ea69b" uuid = "4e6fcdb7-1186-4e1f-a706-475e75c168bb" -version = "0.3.3" +version = "0.3.4" [[deps.OptimizationOptimJL]] deps = ["Optim", "Optimization", "PrecompileTools", "Reexport", "SparseArrays"] -git-tree-sha1 = "a6194340cb4f7d61cec9d6f605848d6a187c64b6" +git-tree-sha1 = "d9e2cca329ce969a3dc26c9278d77bfeff7012ef" uuid = "36348300-93cb-4f02-beb5-3c3902f8871e" -version = "0.4.4" +version = "0.4.5" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2530,9 +2547,9 @@ version = "1.10.1" [[deps.OrdinaryDiffEqCore]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleUnPack", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "688c717e8eee84dcfef02ddf71c8028215b329ca" +git-tree-sha1 = "e0e2c258a699b320927dadfc09e3bbc07adcb55e" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "1.34.0" +version = "1.35.0" weakdeps = ["EnzymeCore", "Mooncake"] [deps.OrdinaryDiffEqCore.extensions] @@ -2547,9 +2564,9 @@ version = "1.8.0" [[deps.OrdinaryDiffEqDifferentiation]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArrayInterface", "StaticArrays"] -git-tree-sha1 = "1fff7356ccb79ca1b1ff3276135fda68d4d661be" +git-tree-sha1 = "320b5f3e4e61ca0ad863c63c803f69973ba6efce" uuid = "4302a76b-040a-498a-8c04-15b101fed76b" -version = "1.16.0" +version = "1.16.1" weakdeps = ["SparseArrays"] [deps.OrdinaryDiffEqDifferentiation.extensions] @@ -2623,9 +2640,9 @@ version = "1.7.0" [[deps.OrdinaryDiffEqNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "StaticArrays"] -git-tree-sha1 = "b05226afc8fa6b8fc6f2258a89987b4f5bd0db4e" +git-tree-sha1 = "f59c1c07cfa674c1d3f5dd386c4274d9bc2be221" uuid = "127b3ac7-2247-4354-8eb6-78cf4e7c58e8" -version = "1.14.1" +version = "1.15.0" [[deps.OrdinaryDiffEqNordsieck]] deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqTsit5", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] @@ -2659,9 +2676,9 @@ version = "1.5.0" [[deps.OrdinaryDiffEqRosenbrock]] deps = ["ADTypes", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "f60d7201a2ceaa7e9a406942f0a2fa3e920715fa" +git-tree-sha1 = "f34bc2f58656843596d09a4c4de8c20724ebc2f1" uuid = "43230ef6-c299-4910-a778-202eb28ce4ce" -version = "1.18.0" +version = "1.18.1" [[deps.OrdinaryDiffEqSDIRK]] deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] @@ -2768,10 +2785,10 @@ uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.4.3" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "bfe839e9668f0c58367fb62d8757315c0eac8777" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "Unzip"] +git-tree-sha1 = "12ce661880f8e309569074a61d3767e5756a199f" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.40.20" +version = "1.41.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -2789,9 +2806,9 @@ version = "1.40.20" [[deps.PoissonRandom]] deps = ["LogExpFunctions", "Random"] -git-tree-sha1 = "c1ea45aa9f209fe97192afa233907bc4e551c8aa" +git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" -version = "0.4.6" +version = "0.4.7" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] @@ -3142,20 +3159,25 @@ version = "0.1.11" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools"] -git-tree-sha1 = "024d829102878141aaee5cf8f8288bcabd2f57a0" +git-tree-sha1 = "1933747abf567c26a58d07a4bab1760372425cba" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.7.2" +version = "1.8.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] SciMLOperatorsSparseArraysExt = "SparseArrays" SciMLOperatorsStaticArraysCoreExt = "StaticArraysCore" +[[deps.SciMLPublic]] +git-tree-sha1 = "ed647f161e8b3f2973f24979ec074e8d084f1bee" +uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" +version = "1.0.0" + [[deps.SciMLSensitivity]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "Enzyme", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEqCore", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLJacobianOperators", "SciMLStructures", "StaticArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tracker", "Zygote"] -git-tree-sha1 = "e1b5f9b3be1452591c40a88de9efb265ebe76030" +git-tree-sha1 = "3daf56b14764a18b47ccd0b3560dc583a180727f" uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.89.0" +version = "7.90.0" weakdeps = ["Mooncake"] [deps.SciMLSensitivity.extensions] @@ -3228,9 +3250,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "782c67176b473abf62a6786399c4b7ddcc1a2d77" +git-tree-sha1 = "8825064775bf4ae0f22d04ea63979d8c868fd510" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.8.0" +version = "2.9.0" weakdeps = ["ChainRulesCore", "ReverseDiff", "Tracker"] [deps.SimpleNonlinearSolve.extensions] @@ -3302,9 +3324,9 @@ version = "0.4.21" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "41852b8679f78c8d8961eeadc8f62cef861a52e3" +git-tree-sha1 = "f2685b435df2613e25fc10ad8c26dddb8640f547" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.5.1" +version = "2.6.1" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -3323,10 +3345,10 @@ uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.3" [[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools"] -git-tree-sha1 = "f737d444cb0ad07e61b3c1bef8eb91203c321eff" +deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] +git-tree-sha1 = "1e44e7b1dbb5249876d84c32466f8988a6b41bbb" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.2.0" +version = "1.3.0" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] @@ -3396,21 +3418,21 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "85a43f6fc30dd80c61342519ca2fc36dac912eae" +git-tree-sha1 = "b117c1fe033a04126780c898e75c7980bf676df3" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.7.6" +version = "0.7.7" [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" +git-tree-sha1 = "88cf3587711d9ad0a55722d339a013c4c56c5bbc" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.7" +version = "0.15.8" [[deps.SteadyStateDiffEq]] deps = ["ConcreteStructs", "DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "NonlinearSolveBase", "Reexport", "SciMLBase"] -git-tree-sha1 = "66a028f9a2bb44d0f6de0814a2b9840af548143a" +git-tree-sha1 = "0a297695b71f24b4158c9c4c1eaaec976a86e87d" uuid = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f" -version = "2.5.0" +version = "2.7.0" [[deps.StochasticDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FastPower", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "StaticArrays", "UnPack"] @@ -3569,9 +3591,9 @@ version = "0.5.5" [[deps.TimeZones]] deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "1f9a3f379a2ce2a213a0f606895567a08a1a2d08" +git-tree-sha1 = "06f4f1f3e8ff09e42e59b043a747332e88e01aba" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.22.0" +version = "1.22.1" weakdeps = ["RecipesBase"] [deps.TimeZones.extensions] @@ -3657,9 +3679,9 @@ version = "1.6.0" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "Compat", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Optimization", "OptimizationOptimJL", "OrderedCollections", "Printf", "Random", "Reexport", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "8e1e790cfdffd15524575b84c4709033d1ea9550" +git-tree-sha1 = "1eb4c81c19e9f245c46c38e0c16e8efa4e484cba" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.40.3" +version = "0.40.4" weakdeps = ["DynamicHMC", "Optim"] [deps.Turing.extensions] @@ -3691,25 +3713,6 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "6258d453843c466d84c17a58732dda5deeb8d3af" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.24.0" -weakdeps = ["ConstructionBase", "ForwardDiff", "InverseFunctions", "Printf"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - ForwardDiffExt = "ForwardDiff" - InverseFunctionsUnitfulExt = "InverseFunctions" - PrintfExt = "Printf" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "af305cc62419f9bd61b6644d19170a4d258c7967" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.7.0" - [[deps.UnsafeAtomics]] git-tree-sha1 = "b13c4edda90890e5b04ba24e20a310fbe6f249ff" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" @@ -3744,9 +3747,9 @@ version = "1.4.2" [[deps.WeightInitializers]] deps = ["ArgCheck", "ConcreteStructs", "GPUArraysCore", "LinearAlgebra", "Random", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "2fe6d8bd39dc8d1f575963eef137f77bd47200c9" +git-tree-sha1 = "c0a2569d1e88648616450ad065d1a5a0138a6d02" uuid = "d49dbf32-c5c2-4618-8acc-27bb2598ef2d" -version = "1.2.0" +version = "1.2.1" [deps.WeightInitializers.extensions] WeightInitializersAMDGPUExt = "AMDGPU" @@ -3829,9 +3832,9 @@ version = "1.3.7+0" [[deps.Xorg_libXfixes_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "9caba99d38404b285db8801d5c45ef4f4f425a6d" +git-tree-sha1 = "75e00946e43621e09d431d9b95818ee751e6b2ef" uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "6.0.1+0" +version = "6.0.2+0" [[deps.Xorg_libXi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] @@ -3871,9 +3874,9 @@ version = "1.1.3+0" [[deps.Xorg_xcb_util_cursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "c5bf2dad6a03dfef57ea0a170a1fe493601603f2" +git-tree-sha1 = "9750dc53819eba4e9a20be42349a6d3b86c7cdf8" uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.5+0" +version = "0.1.6+0" [[deps.Xorg_xcb_util_image_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] @@ -3972,9 +3975,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4bba74fa59ab0755167ad24f98800fe5d727175b" +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.12.1+0" +version = "3.13.1+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"]