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‎pr-previews/126/DoodleBUGS/index.html‎

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‎pr-previews/126/doodlebugs-gsoc-2025-final-report/index.html‎

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‎pr-previews/126/doodlebugs-introduction/index.html‎

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"/news/posts/2025-08-28-DoodleBUGS-Introduction/index.html",
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"/news/posts/DoodleBUGS-Introduction/index.html",
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‎pr-previews/126/news/index.xml‎

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<item>
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<title>Introducing DoodleBUGS: a Browser-Based Graphical Interface for JuliaBUGS</title>
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<dc:creator>Shravan Goswami</dc:creator>
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<link>https://turinglang.org/news/posts/2025-08-28-DoodleBUGS-Introduction/</link>
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<link>https://turinglang.org/news/posts/DoodleBUGS-Introduction/</link>
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<description><![CDATA[
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</ul>
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<p><strong>Frontend architecture (Vue 3 + Cytoscape.js)</strong></p>
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<ul>
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<li>Core graph state is managed in Vue; Cytoscape.js handles layout, hit-testing, and interaction semantics (including compound nodes for plates) <span class="citation" data-cites="cytoscapejs">[9]</span>.</li>
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<li>Core graph state is managed in Vue; <a href="https://js.cytoscape.org/">Cytoscape.js</a> handles layout, hit-testing, and interaction semantics (including compound nodes for plates) <span class="citation" data-cites="cytoscapejs">[9]</span>.</li>
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<li>Code generation lives in <code>DoodleBUGS/src/composables/useBugsCodeGenerator.ts</code> and maps <code>GraphNode</code>/<code>GraphEdge</code> to BUGS:
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<ul>
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<li>Kahn topological sort for definition order</li>
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</ul>
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</section>
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<section id="why-vue-not-react" class="level2">
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<h2 class="anchored" data-anchor-id="why-vue-not-react">Why Vue (not React)</h2>
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<h2 class="anchored" data-anchor-id="why-vue-not-react">Why Vue (not React)?</h2>
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<p>The proposal planned React; we chose Vue 3 after evaluating the graph layer and developer velocity for this app.</p>
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<ul>
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<li>Tried Konva (canvas) for custom graph editing: powerful drawing primitives, but required bespoke graph semantics (hit testing, edge routing, compound nodes) that Cytoscape.js provides out of the box.</li>
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<li>Tried Konva (canvas) for custom graph editing: powerful drawing primitives, but required bespoke graph semantics (hit testing, edge routing, compound nodes) that <a href="https://js.cytoscape.org/">Cytoscape.js</a> provides out of the box.</li>
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<li>Tried D3 force/layouts: flexible, but compound nodes (plates), nesting, and drag constraints became a significant amount of custom code to maintain.</li>
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<li>Cytoscape.js offered:
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<li><a href="https://js.cytoscape.org/">Cytoscape.js</a> offered:
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<li>Native graph model with compound nodes (great for plates)</li>
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<li>Integrated layouts (WebCola, KLay) and rich interaction APIs <span class="citation" data-cites="webcola elk">[16], [17]</span></li>
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<li>Mature ecosystem and performance characteristics for medium-sized graphs</li>
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</ul></li>
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<li>Vue 3 (vs React) for this project:
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<li><a href="https://vuejs.org/">Vue 3</a> (vs React) for this project:
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<ul>
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<li>Composition API made integrating an imperative graph library (Cytoscape) straightforward via composables and lifecycle hooks</li>
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<li>SFC ergonomics and Pinia stores enabled quick iteration with strong TypeScript support</li>
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<li>Graph engine and plates
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<ul>
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<li>Legacy: Bespoke graph handling with limited nesting semantics</li>
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<li>New: Cytoscape.js with compound nodes for robust nested plates; custom DnD for drag-in/out and creating inside plates</li>
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<li>New: <a href="https://js.cytoscape.org/">Cytoscape.js</a> with compound nodes for robust nested plates; custom DnD for drag-in/out and creating inside plates</li>
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<li>Layouts and interactions
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<section id="future-work" class="level2">
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<h2 class="anchored" data-anchor-id="future-work">Future Work</h2>
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<ul>
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<li>Backend: Add Pluto.jl as a backend for supporting compound documents and QuartoNotebookRunner.jl for running notebooks.</li>
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<li>Diagnostics/visualization: R-hat, ESS, trace plots, PPC, posterior densities</li>
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<li>UX: richer node templates, validation, distribution hints</li>
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<h2 class="anchored" data-anchor-id="acknowledgements">Acknowledgements</h2>
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<p>Much appreciation goes to my mentors Xianda Sun and Hong Ge. The work is impossible without your help and support.</p>
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<ul>
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<li>Mentor: Xianda Sun (<a href="https://github.com/sunxd3">@sunxd3</a>)</li>
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<li>Advisor: Hong Ge (<a href="https://github.com/yebai">@yebai</a>)</li>
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<li>Mentors: Xianda Sun (<a href="https://github.com/sunxd3">@sunxd3</a>) and Hong Ge (<a href="https://github.com/yebai">@yebai</a>)</li>
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<li>TuringLang/JuliaBUGS community and contributors</li>
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</div>
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</div></section></div> ]]></description>
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<category>GSoC</category>
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<guid>https://turinglang.org/news/posts/2025-08-28-DoodleBUGS-Introduction/</guid>
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<category>Blog</category>
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<guid>https://turinglang.org/news/posts/DoodleBUGS-Introduction/</guid>
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<pubDate>Thu, 28 Aug 2025 00:00:00 GMT</pubDate>
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</item>
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