Moves the executing script as a shell command accessible from anywhere

Author: dpshelio

pyproject.toml

@@ -10,3 +10,6 @@ version = "0.1.0"
 packages = [
   "src/sagittal_average",
 ]
+
+[project.scripts]
+sagittal_average_run = "sagittal_average.command:process"

src/sagittal_average/command.py

@@ -0,0 +1,14 @@
+from argparse import ArgumentParser, ArgumentDefaultsHelpFormatter
+
+from .sagittal_brain import run_averages
+
+def process():
+    parser = ArgumentParser(description="Calculates the average for each sagittal-horizontal plane.",
+                            formatter_class=ArgumentDefaultsHelpFormatter)
+    parser.add_argument('file_input', nargs='?', default="brain_sample.csv",
+                        help="Input CSV file with the results from scikit-brain binning algorithm.")
+    parser.add_argument('--file_output', '-o', default="brain_average.csv",
+                        help="Name of the output CSV file.")
+    arguments = parser.parse_args()
+
+    run_averages(arguments.file_input, arguments.file_output)

src/sagittal_average/sagittal_brain.py

@@ -20,15 +20,3 @@ def run_averages(file_input='brain_sample.csv', file_output='brain_average.csv')
 
     # write it out on my file
     np.savetxt(file_output, averages, fmt='%.1f', delimiter=',')
-
-
-if __name__ == "__main__":
-    parser = ArgumentParser(description="Calculates the average for each sagittal-horizontal plane.",
-                            formatter_class=ArgumentDefaultsHelpFormatter)
-    parser.add_argument('file_input', nargs='?', default="brain_sample.csv",
-                        help="Input CSV file with the results from scikit-brain binning algorithm.")
-    parser.add_argument('--file_output', '-o', default="brain_average.csv",
-                        help="Name of the output CSV file.")
-    arguments = parser.parse_args()
-
-    run_averages(arguments.file_input, arguments.file_output)