Merge pull request #691 from UWB-Biocomputing/issue-358-improve-regression-setup

Improves our regression setup by adding good output files generated using the GPU implementation and reorganizing the output folders into folders for separate CPU and GPU outputs. A README has also been added showing the terminal commands used for generating the GPU outputs.

Author: NicolasJPosey

.github/workflows/tests.yml

@@ -36,39 +36,39 @@ jobs:
       run: ./cgraphitti -c ../Testing/RegressionTesting/configfiles/test-tiny.xml
     - name: verify test-tiny
       if: always() && steps.tt.conclusion == 'success'
-      run: diff ../Testing/RegressionTesting/TestOutput/test-tiny-out.xml ../Testing/RegressionTesting/GoodOutput/test-tiny-out.xml
+      run: diff ../Testing/RegressionTesting/TestOutput/test-tiny-out.xml ../Testing/RegressionTesting/GoodOutput/Cpu/test-tiny-out.xml
 
     - id: ts
       name: run test-small
       if: always() && steps.build.conclusion == 'success'
       run: ./cgraphitti -c ../Testing/RegressionTesting/configfiles/test-small.xml
     - name: verify test-small
       if: always() && steps.ts.conclusion == 'success'
-      run: diff ../Testing/RegressionTesting/TestOutput/test-small-out.xml ../Testing/RegressionTesting/GoodOutput/test-small-out.xml
+      run: diff ../Testing/RegressionTesting/TestOutput/test-small-out.xml ../Testing/RegressionTesting/GoodOutput/Cpu/test-small-out.xml
 
     - id: tsc
       name: run test-small-connected
       if: always() && steps.build.conclusion == 'success'
       run: ./cgraphitti -c ../Testing/RegressionTesting/configfiles/test-small-connected.xml
     - name: verify test-small-connected
       if: always() && steps.tsc.conclusion == 'success'
-      run: diff ../Testing/RegressionTesting/TestOutput/test-small-connected-out.xml ../Testing/RegressionTesting/GoodOutput/test-small-connected-out.xml
+      run: diff ../Testing/RegressionTesting/TestOutput/test-small-connected-out.xml ../Testing/RegressionTesting/GoodOutput/Cpu/test-small-connected-out.xml
 
     - id: tsl
       name: run test-small-long
       if: always() && steps.build.conclusion == 'success'
       run: ./cgraphitti -c ../Testing/RegressionTesting/configfiles/test-small-long.xml
     - name: verify test-small-long
       if: always() && steps.tsl.conclusion == 'success'
-      run: diff ../Testing/RegressionTesting/TestOutput/test-small-long-out.xml ../Testing/RegressionTesting/GoodOutput/test-small-long-out.xml
+      run: diff ../Testing/RegressionTesting/TestOutput/test-small-long-out.xml ../Testing/RegressionTesting/GoodOutput/Cpu/test-small-long-out.xml
 
     - id: tscl
       name: run test-small-connected-long
       if: always() && steps.build.conclusion == 'success'
       run: ./cgraphitti -c ../Testing/RegressionTesting/configfiles/test-small-connected-long.xml
     - name: verify test-small-connected-long
       if: always() && steps.tscl.conclusion == 'success'
-      run: diff ../Testing/RegressionTesting/TestOutput/test-small-connected-long-out.xml ../Testing/RegressionTesting/GoodOutput/test-small-connected-long-out.xml
+      run: diff ../Testing/RegressionTesting/TestOutput/test-small-connected-long-out.xml ../Testing/RegressionTesting/GoodOutput/Cpu/test-small-connected-long-out.xml
 
     - id: ts911
       name: run test-small-911
@@ -84,28 +84,28 @@ jobs:
       run: ./cgraphitti -c ../Testing/RegressionTesting/configfiles/test-medium.xml
     - name: verify test-medium
       if: always() && steps.tm.conclusion == 'success'
-      run: diff ../Testing/RegressionTesting/TestOutput/test-medium-out.xml ../Testing/RegressionTesting/GoodOutput/test-medium-out.xml
+      run: diff ../Testing/RegressionTesting/TestOutput/test-medium-out.xml ../Testing/RegressionTesting/GoodOutput/Cpu/test-medium-out.xml
 
     - id: tmc
       name: run test-medium-connected
       if: always() && steps.build.conclusion == 'success'
       run: ./cgraphitti -c ../Testing/RegressionTesting/configfiles/test-medium-connected.xml
     - name: verify test-medium-connected
       if: always() && steps.tmc.conclusion == 'success'
-      run: diff ../Testing/RegressionTesting/TestOutput/test-medium-connected-out.xml ../Testing/RegressionTesting/GoodOutput/test-medium-connected-out.xml
+      run: diff ../Testing/RegressionTesting/TestOutput/test-medium-connected-out.xml ../Testing/RegressionTesting/GoodOutput/Cpu/test-medium-connected-out.xml
 
     - id: tml
       name: run test-medium-long
       if: always() && steps.build.conclusion == 'success'
       run: ./cgraphitti -c ../Testing/RegressionTesting/configfiles/test-medium-long.xml
     - name: verify test-medium-long
       if: always() && steps.tml.conclusion == 'success'
-      run: diff ../Testing/RegressionTesting/TestOutput/test-medium-long-out.xml ../Testing/RegressionTesting/GoodOutput/test-medium-long-out.xml
+      run: diff ../Testing/RegressionTesting/TestOutput/test-medium-long-out.xml ../Testing/RegressionTesting/GoodOutput/Cpu/test-medium-long-out.xml
 
     - id: tmcl
       name: run test-medium-connected-long
       if: always() && steps.build.conclusion == 'success'
       run: ./cgraphitti -c ../Testing/RegressionTesting/configfiles/test-medium-connected-long.xml
     - name: verify test-medium-connected-long
       if: always() && steps.tmcl.conclusion == 'success'
-      run: diff ../Testing/RegressionTesting/TestOutput/test-medium-connected-long-out.xml ../Testing/RegressionTesting/GoodOutput/test-medium-connected-long-out.xml
+      run: diff ../Testing/RegressionTesting/TestOutput/test-medium-connected-long-out.xml ../Testing/RegressionTesting/GoodOutput/Cpu/test-medium-connected-long-out.xml

Testing/README.md

@@ -0,0 +1,15 @@
+Documentation of steps for generating GPU GoodOutput files.
+
+Results generated at 4pm on August 7th, 2024 using development branch
+
+GPU GoodOutput generation commands
+test-medium-connected-long-out.xml: ./ggraphitti -c ../Testing/RegressionTesting/configfiles/test-medium-connected-long.xml
+test-medium-connected-out.xml: ./ggraphitti -c ../Testing/RegressionTesting/configfiles/test-medium-connected.xml
+test-medium-long-out.xml: ./ggraphitti -c ../Testing/RegressionTesting/configfiles/test-medium-long.xml
+test-medium-out.xml: ./ggraphitti -c ../Testing/RegressionTesting/configfiles/test-medium.xml
+test-small-911-out.xml: n/a No GPU model available
+test-small-connected-long-out.xml: ./ggraphitti -c ../Testing/RegressionTesting/configfiles/test-small-connected-long.xml
+test-small-connected-out.xml: ./ggraphitti -c ../Testing/RegressionTesting/configfiles/test-small-connected.xml
+test-small-long-out.xml: ./ggraphitti -c ../Testing/RegressionTesting/configfiles/test-small-long.xml
+test-small-out.xml: ./ggraphitti -c ../Testing/RegressionTesting/configfiles/test-small.xml
+test-tiny-out.xml: ./ggraphitti -c ../Testing/RegressionTesting/configfiles/test-tiny.xml