diff --git a/com.unity.netcode.gameobjects/CHANGELOG.md b/com.unity.netcode.gameobjects/CHANGELOG.md
index 971c8b5db6..253d27f226 100644
--- a/com.unity.netcode.gameobjects/CHANGELOG.md
+++ b/com.unity.netcode.gameobjects/CHANGELOG.md
@@ -19,6 +19,7 @@ Additional documentation and release notes are available at [Multiplayer Documen
 
 ### Fixed
 
+- Fixed issue where `NetworkPrefabProcessor` would not mark the prefab list as dirty and prevent saving the `DefaultNetworkPrefabs` asset when only imports or only deletes were detected.(#3103)
 - Fixed issue with nested `NetworkTransform` components clearing their initial prefab settings when in owner authoritative mode on the server side while using a client-server network topology which resulted in improper synchronization of the nested `NetworkTransform` components. (#3099)
 - Fixed issue with service not getting synchronized with in-scene placed `NetworkObject` instances when a session owner starts a `SceneEventType.Load` event. (#3096)
 - Fixed issue with the in-scene network prefab instance update menu tool where it was not properly updating scenes when invoked on the root prefab instance. (#3092)
diff --git a/com.unity.netcode.gameobjects/Editor/Configuration/NetworkPrefabProcessor.cs b/com.unity.netcode.gameobjects/Editor/Configuration/NetworkPrefabProcessor.cs
index 879a8c3e75..55f5fcbfc4 100644
--- a/com.unity.netcode.gameobjects/Editor/Configuration/NetworkPrefabProcessor.cs
+++ b/com.unity.netcode.gameobjects/Editor/Configuration/NetworkPrefabProcessor.cs
@@ -132,7 +132,7 @@ bool ProcessDeletedAssets(string[] strings)
 
             // Process the imported and deleted assets
             var markDirty = ProcessImportedAssets(importedAssets);
-            markDirty &= ProcessDeletedAssets(deletedAssets);
+            markDirty |= ProcessDeletedAssets(deletedAssets);
 
             if (markDirty)
             {