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paper.md

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@@ -63,7 +63,7 @@ statistical and programming skills to primarily upper-year undergraduate biology
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students. Our learning module has three self-contained submodules spanning
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sixteen lessons: 1) Programming in R, basic data wrangling, and visualizations;
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2) Exploratory data analysis, statistics, and modelling; and 3) Collaborative
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and reproducible science. Our learning module includes eight assignments,
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and reproducible science. Our learning module includes eight assignments
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distributed throughout the term to assess students' learning and understanding.
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The material is made available as R Markdown documents and designed to be taught
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using R Notebooks. Students are not expected to have any prior knowledge of the
@@ -144,9 +144,9 @@ coding along, forms the primary focus of each lesson. This hands-on approach to
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teaching is frequently used by teaching organizations such as
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[Software Carpentry](https://software-carpentry.org/blog/2016/04/tips-tricks-live-coding.html)
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[@carpentry;@rubin_effectiveness_2013;@haaranen_programming_2017;@wilson_teaching_2018].
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While many learning outcomes focused on developing programming proficiency, some
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lessons were centred around concepts (such as "Statistical Modelling" or
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"Differential Equations"), during which we still used the live-coding approach.
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While many learning outcomes focus on developing programming proficiency, some
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lessons are centred around concepts (such as "Statistical Modelling" or
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"Differential Equations"), during which we still use the live-coding approach.
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This approach not only demonstrates the concepts in a step-by-step fashion but
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also helps students practice writing code.
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3. *Interwoven Exercises*: Coding exercises or discussion points are
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To maximize the learning experience, we prioritized in-class participation,
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engagement, and hands-on experience. The main teaching techniques we used to
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achieve this goal were participatory live-coding, interweaving exercises with
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achieve this goal were participatory live-coding, exercises interwoven with
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teaching, and project-based learning
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[@sawyer_cambridge_2006;@strobel_when_2009;@markham_project_2011] where students
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collaborated in teams on data analysis problems to mimic a real world scenario.
@@ -209,7 +209,7 @@ tools, as they usually must use what their supervisor or colleagues use. Those
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who do try to learn these modern tools often do so in isolation and without much
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formal training available. These are major barriers to learning. To help break
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down these barriers, we launched the graduate student group
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[University of Toronto Coders](http://uoftcoders.github.io/) where we run
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[University of Toronto Coders](https://uoftcoders.github.io/) where we run
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peer-led learning sessions on using code for research through skill sharing,
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co-working, and community building in a friendly and supportive environment.
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@@ -243,6 +243,6 @@ JSS, LC, MB-F, and ARH taught the second iteration of the course, with guest
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lectures from SM and LT. Lesson development for second iteration: JO and ARH
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(1-5), JSS (8, 9, 11), LC (6, 7, 10), MB-F (12, 13), LWJ (14), ARH and SM (15),
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LT (16). LWJ, MB-F, JO, SM, LT, ARH, and JSS wrote the paper. LWJ, MB-F, ES, JO,
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LT, JSS, and AH proofread and editted the final draft.
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LT, JSS, and AH proofread and edited the final draft.
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# References

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