Update of TOC and index

Author: RikDTJanssen

docs/ricgraph_index_documentation.md

@@ -150,8 +150,8 @@ __R__
 - [Research outputs connected to persons](../docs/ricgraph_details.md#research-outputs-connected-to-persons)
 - [Research question “What are the research results of person A” ](../docs/ricgraph_explorer.md#research-question-what-are-the-research-results-of-person-a-)
 - [Restore a Neo4j Community Edition database dump of Ricgraph in Neo4j Community Edition](../docs/ricgraph_install_configure.md#restore-a-neo4j-community-edition-database-dump-of-ricgraph-in-neo4j-community-edition)
-- [Restore a Neo4j Desktop database dump of Ricgraph in Neo4j Community Edition](../docs/ricgraph_install_configure.md#restore-a-neo4j-desktop-database-dump-of-ricgraph-in-neo4j-community-edition)
 - [Restore a Neo4j Desktop database dump of Ricgraph in Neo4j Community Edition](../docs/ricgraph_as_server.md#restore-a-neo4j-desktop-database-dump-of-ricgraph-in-neo4j-community-edition)
+- [Restore a Neo4j Desktop database dump of Ricgraph in Neo4j Community Edition](../docs/ricgraph_install_configure.md#restore-a-neo4j-desktop-database-dump-of-ricgraph-in-neo4j-community-edition)
 - [Restore a Neo4j Desktop database dump of Ricgraph in Neo4j Desktop](../docs/ricgraph_install_configure.md#restore-a-neo4j-desktop-database-dump-of-ricgraph-in-neo4j-desktop)
 - [Results page](../docs/ricgraph_explorer.md#results-page)
 - [Ricgraph - Research in context graph ](../README.md#ricgraph---research-in-context-graph-)

docs/ricgraph_toc_documentation.md

@@ -16,6 +16,37 @@ This table of contents has been generated automatically.
     - [Read this in case you would like to extend Ricgraph](../README.md#read-this-in-case-you-would-like-to-extend-ricgraph)
     - [Ricgraph website](../README.md#ricgraph-website)
   - [Contact](../README.md#contact)
+- [Ricgraph as a server on Linux](../docs/ricgraph_as_server.md#ricgraph-as-a-server-on-linux)
+  - [Check the requirements](../docs/ricgraph_as_server.md#check-the-requirements)
+  - [Install and start Neo4j Community Edition](../docs/ricgraph_as_server.md#install-and-start-neo4j-community-edition)
+    - [Post-install steps Neo4j Community Edition](../docs/ricgraph_as_server.md#post-install-steps-neo4j-community-edition)
+  - [Install and start Memgraph](../docs/ricgraph_as_server.md#install-and-start-memgraph)
+  - [Create a ricgraph user and group](../docs/ricgraph_as_server.md#create-a-ricgraph-user-and-group)
+  - [Create a Python virtual environment and install Ricgraph in it](../docs/ricgraph_as_server.md#create-a-python-virtual-environment-and-install-ricgraph-in-it)
+  - [Run Ricgraph scripts from the command line or as a cronjob](../docs/ricgraph_as_server.md#run-ricgraph-scripts-from-the-command-line-or-as-a-cronjob)
+    - [In case you have installed Ricgraph as a server](../docs/ricgraph_as_server.md#in-case-you-have-installed-ricgraph-as-a-server)
+    - [In case you have installed Ricgraph for a single user](../docs/ricgraph_as_server.md#in-case-you-have-installed-ricgraph-for-a-single-user)
+    - [Using the Makefile](../docs/ricgraph_as_server.md#using-the-makefile)
+  - [Use a service unit file to run Ricgraph Explorer and the Ricgraph REST API](../docs/ricgraph_as_server.md#use-a-service-unit-file-to-run-ricgraph-explorer-and-the-ricgraph-rest-api)
+  - [Use Apache, WSGI, and ASGI to make Ricgraph Explorer and the Ricgraph REST API accessible from outside your virtual machine](../docs/ricgraph_as_server.md#use-apache-wsgi-and-asgi-to-make-ricgraph-explorer-and-the-ricgraph-rest-api-accessible-from-outside-your-virtual-machine)
+    - [Introduction Apache webserver](../docs/ricgraph_as_server.md#introduction-apache-webserver)
+    - [Installation Apache](../docs/ricgraph_as_server.md#installation-apache)
+    - [Post-install steps Apache](../docs/ricgraph_as_server.md#post-install-steps-apache)
+  - [Use Nginx, WSGI, and ASGI to make Ricgraph Explorer and the Ricgraph REST API accessible from outside your virtual machine](../docs/ricgraph_as_server.md#use-nginx-wsgi-and-asgi-to-make-ricgraph-explorer-and-the-ricgraph-rest-api-accessible-from-outside-your-virtual-machine)
+    - [Introduction Nginx webserver](../docs/ricgraph_as_server.md#introduction-nginx-webserver)
+    - [Installation Nginx](../docs/ricgraph_as_server.md#installation-nginx)
+    - [Post-install steps Nginx](../docs/ricgraph_as_server.md#post-install-steps-nginx)
+  - [Restore a Neo4j Desktop database dump of Ricgraph in Neo4j Community Edition](../docs/ricgraph_as_server.md#restore-a-neo4j-desktop-database-dump-of-ricgraph-in-neo4j-community-edition)
+  - [How to install Ricgraph and Ricgraph Explorer on SURF Research Cloud](../docs/ricgraph_as_server.md#how-to-install-ricgraph-and-ricgraph-explorer-on-surf-research-cloud)
+  - [How to solve an AttributeError: Neo4jDriver object has no attribute executequery](../docs/ricgraph_as_server.md#how-to-solve-an-attributeerror-neo4jdriver-object-has-no-attribute-executequery)
+- [Ricgraph comparison](../docs/ricgraph_comparison.md#ricgraph-comparison)
+  - [General overview](../docs/ricgraph_comparison.md#general-overview)
+  - [Extendability](../docs/ricgraph_comparison.md#extendability)
+- [Ricgraph in a container](../docs/ricgraph_containerized.md#ricgraph-in-a-container)
+  - [Notes on the Ricgraph Podman container](../docs/ricgraph_containerized.md#notes-on-the-ricgraph-podman-container)
+  - [Install Podman](../docs/ricgraph_containerized.md#install-podman)
+  - [Install and run the Ricgraph Podman container](../docs/ricgraph_containerized.md#install-and-run-the-ricgraph-podman-container)
+  - [Advanced use of the Ricgraph Podman container](../docs/ricgraph_containerized.md#advanced-use-of-the-ricgraph-podman-container)
 - [Implementation details](../docs/ricgraph_details.md#implementation-details)
   - [Person identifiers](../docs/ricgraph_details.md#person-identifiers)
   - [Person-root node in Ricgraph](../docs/ricgraph_details.md#person-root-node-in-ricgraph)
@@ -57,6 +88,7 @@ This table of contents has been generated automatically.
   - [Harvest of software from the Research Software Directory (harvest_rsd_to_ricgraph.py)](../docs/ricgraph_harvest_scripts.md#harvest-of-software-from-the-research-software-directory-harvest_rsd_to_ricgraphpy)
   - [Order of running the harvest scripts](../docs/ricgraph_harvest_scripts.md#order-of-running-the-harvest-scripts)
   - [How to make your own harvesting scripts](../docs/ricgraph_harvest_scripts.md#how-to-make-your-own-harvesting-scripts)
+- [Index Ricgraph documentation](../docs/ricgraph_index_documentation.md#index-ricgraph-documentation)
 - [Install and configure Ricgraph](../docs/ricgraph_install_configure.md#install-and-configure-ricgraph)
   - [Ricgraph Makefile](../docs/ricgraph_install_configure.md#ricgraph-makefile)
   - [Installation instructions for a single user](../docs/ricgraph_install_configure.md#installation-instructions-for-a-single-user)
@@ -119,39 +151,6 @@ This table of contents has been generated automatically.
   - [Installation of the Ricgraph REST API](../docs/ricgraph_restapi.md#installation-of-the-ricgraph-rest-api)
   - [Use of the Ricgraph REST API](../docs/ricgraph_restapi.md#use-of-the-ricgraph-rest-api)
   - [Generate the Ricgraph REST API documentation page](../docs/ricgraph_restapi.md#generate-the-ricgraph-rest-api-documentation-page)
-- [Ricgraph script writing](../docs/ricgraph_script_writing.md#ricgraph-script-writing)
-  - [How to make your own harvesting scripts](../docs/ricgraph_script_writing.md#how-to-make-your-own-harvesting-scripts)
-  - [General program structure of a Python script using Ricgraph](../docs/ricgraph_script_writing.md#general-program-structure-of-a-python-script-using-ricgraph)
-  - [Structure of a Python script that is harvesting data](../docs/ricgraph_script_writing.md#structure-of-a-python-script-that-is-harvesting-data)
-  - [Function calls for inserting nodes](../docs/ricgraph_script_writing.md#function-calls-for-inserting-nodes)
-  - [Function call for unifying personal identifiers](../docs/ricgraph_script_writing.md#function-call-for-unifying-personal-identifiers)
-  - [Function calls to create, read (find), update and delete (CRUD) nodes](../docs/ricgraph_script_writing.md#function-calls-to-create-read-find-update-and-delete-crud-nodes)
-  - [Function calls to get neighbors of nodes](../docs/ricgraph_script_writing.md#function-calls-to-get-neighbors-of-nodes)
-- [Index Ricgraph documentation](../docs/ricgraph_index_documentation.md#index-ricgraph-documentation)
-- [Table of contents Ricgraph documentation](../docs/ricgraph_toc_documentation.md#table-of-contents-ricgraph-documentation)
-- [Ricgraph as a server on Linux](../docs/ricgraph_as_server.md#ricgraph-as-a-server-on-linux)
-  - [Check the requirements](../docs/ricgraph_as_server.md#check-the-requirements)
-  - [Install and start Neo4j Community Edition](../docs/ricgraph_as_server.md#install-and-start-neo4j-community-edition)
-    - [Post-install steps Neo4j Community Edition](../docs/ricgraph_as_server.md#post-install-steps-neo4j-community-edition)
-  - [Install and start Memgraph](../docs/ricgraph_as_server.md#install-and-start-memgraph)
-  - [Create a ricgraph user and group](../docs/ricgraph_as_server.md#create-a-ricgraph-user-and-group)
-  - [Create a Python virtual environment and install Ricgraph in it](../docs/ricgraph_as_server.md#create-a-python-virtual-environment-and-install-ricgraph-in-it)
-  - [Run Ricgraph scripts from the command line or as a cronjob](../docs/ricgraph_as_server.md#run-ricgraph-scripts-from-the-command-line-or-as-a-cronjob)
-    - [In case you have installed Ricgraph as a server](../docs/ricgraph_as_server.md#in-case-you-have-installed-ricgraph-as-a-server)
-    - [In case you have installed Ricgraph for a single user](../docs/ricgraph_as_server.md#in-case-you-have-installed-ricgraph-for-a-single-user)
-    - [Using the Makefile](../docs/ricgraph_as_server.md#using-the-makefile)
-  - [Use a service unit file to run Ricgraph Explorer and the Ricgraph REST API](../docs/ricgraph_as_server.md#use-a-service-unit-file-to-run-ricgraph-explorer-and-the-ricgraph-rest-api)
-  - [Use Apache, WSGI, and ASGI to make Ricgraph Explorer and the Ricgraph REST API accessible from outside your virtual machine](../docs/ricgraph_as_server.md#use-apache-wsgi-and-asgi-to-make-ricgraph-explorer-and-the-ricgraph-rest-api-accessible-from-outside-your-virtual-machine)
-    - [Introduction Apache webserver](../docs/ricgraph_as_server.md#introduction-apache-webserver)
-    - [Installation Apache](../docs/ricgraph_as_server.md#installation-apache)
-    - [Post-install steps Apache](../docs/ricgraph_as_server.md#post-install-steps-apache)
-  - [Use Nginx, WSGI, and ASGI to make Ricgraph Explorer and the Ricgraph REST API accessible from outside your virtual machine](../docs/ricgraph_as_server.md#use-nginx-wsgi-and-asgi-to-make-ricgraph-explorer-and-the-ricgraph-rest-api-accessible-from-outside-your-virtual-machine)
-    - [Introduction Nginx webserver](../docs/ricgraph_as_server.md#introduction-nginx-webserver)
-    - [Installation Nginx](../docs/ricgraph_as_server.md#installation-nginx)
-    - [Post-install steps Nginx](../docs/ricgraph_as_server.md#post-install-steps-nginx)
-  - [Restore a Neo4j Desktop database dump of Ricgraph in Neo4j Community Edition](../docs/ricgraph_as_server.md#restore-a-neo4j-desktop-database-dump-of-ricgraph-in-neo4j-community-edition)
-  - [How to install Ricgraph and Ricgraph Explorer on SURF Research Cloud](../docs/ricgraph_as_server.md#how-to-install-ricgraph-and-ricgraph-explorer-on-surf-research-cloud)
-  - [How to solve an AttributeError: Neo4jDriver object has no attribute executequery](../docs/ricgraph_as_server.md#how-to-solve-an-attributeerror-neo4jdriver-object-has-no-attribute-executequery)
 - [Ricgraph - Research in context graph REST API](../docs/ricgraph_restapi_gendoc.md#ricgraph---research-in-context-graph-rest-api)
     - [How to use](../docs/ricgraph_restapi_gendoc.md#how-to-use)
     - [Technicalities](../docs/ricgraph_restapi_gendoc.md#technicalities)
@@ -173,11 +172,12 @@ This table of contents has been generated automatically.
     - [GET /get_all_personroot_nodes](../docs/ricgraph_restapi_gendoc.md#get-get_all_personroot_nodes)
     - [GET /get_all_neighbor_nodes](../docs/ricgraph_restapi_gendoc.md#get-get_all_neighbor_nodes)
     - [GET /get_ricgraph_list](../docs/ricgraph_restapi_gendoc.md#get-get_ricgraph_list)
-- [Ricgraph comparison](../docs/ricgraph_comparison.md#ricgraph-comparison)
-  - [General overview](../docs/ricgraph_comparison.md#general-overview)
-  - [Extendability](../docs/ricgraph_comparison.md#extendability)
-- [Ricgraph in a container](../docs/ricgraph_containerized.md#ricgraph-in-a-container)
-  - [Notes on the Ricgraph Podman container](../docs/ricgraph_containerized.md#notes-on-the-ricgraph-podman-container)
-  - [Install Podman](../docs/ricgraph_containerized.md#install-podman)
-  - [Install and run the Ricgraph Podman container](../docs/ricgraph_containerized.md#install-and-run-the-ricgraph-podman-container)
-  - [Advanced use of the Ricgraph Podman container](../docs/ricgraph_containerized.md#advanced-use-of-the-ricgraph-podman-container)
+- [Ricgraph script writing](../docs/ricgraph_script_writing.md#ricgraph-script-writing)
+  - [How to make your own harvesting scripts](../docs/ricgraph_script_writing.md#how-to-make-your-own-harvesting-scripts)
+  - [General program structure of a Python script using Ricgraph](../docs/ricgraph_script_writing.md#general-program-structure-of-a-python-script-using-ricgraph)
+  - [Structure of a Python script that is harvesting data](../docs/ricgraph_script_writing.md#structure-of-a-python-script-that-is-harvesting-data)
+  - [Function calls for inserting nodes](../docs/ricgraph_script_writing.md#function-calls-for-inserting-nodes)
+  - [Function call for unifying personal identifiers](../docs/ricgraph_script_writing.md#function-call-for-unifying-personal-identifiers)
+  - [Function calls to create, read (find), update and delete (CRUD) nodes](../docs/ricgraph_script_writing.md#function-calls-to-create-read-find-update-and-delete-crud-nodes)
+  - [Function calls to get neighbors of nodes](../docs/ricgraph_script_writing.md#function-calls-to-get-neighbors-of-nodes)
+- [Table of contents Ricgraph documentation](../docs/ricgraph_toc_documentation.md#table-of-contents-ricgraph-documentation)