@@ -9,6 +9,7 @@ To cite this document, please use the citation details for [MaveDB](https://www.
99| [ 19915551] ( https://www.ncbi.nlm.nih.gov/pubmed/19915551 ) | [ 10.1038/nbt.1589] ( https://dx.doi.org/10.1038/nbt.1589 ) | Patwardhan | 2009 | MPRA | T3 promoter, T7 promoter, SP6 promoter, CMV promoter, HBB promoter, S100A4 promoter | in vitro | Transcription | microarray synthesis | Illumina | SRP001721 | TXT |
1010| [ 20711194] ( https://www.ncbi.nlm.nih.gov/pubmed/20711194 ) | [ 10.1038/nmeth.1492] ( https://dx.doi.org/10.1038/nmeth.1492 ) | Fowler | 2010 | DMS | WW domain | Phage | Binding | doped oligo synthesis | Illumina | SRP002725 | No |
1111| [ 20714644] ( https://www.ncbi.nlm.nih.gov/pubmed/20714644 ) | [ 10.1039/c0mb00061b] ( https://dx.doi.org/10.1039/c0mb00061b ) | Ernst | 2010 | DMS | Synthetic PDZ domain | Phage | Binding | Kunkel | Roche 454 | No | No |
12+ | [ 20439748] ( https://www.ncbi.nlm.nih.gov/pubmed/20439748 ) | [ 10.1073/pnas.1004290107] ( https://dx.doi.org/10.1073%2Fpnas.1004290107 ) | Kinney | 2010 | MPRA | lac promoter | E.coli | FACS | Cassette ligation | Roche 454 | SRA012345 | No |
1213| [ 21464309] ( https://www.ncbi.nlm.nih.gov/pubmed/21464309 ) | [ 10.1073/pnas.1016024108] ( https://dx.doi.org/10.1073/pnas.1016024108 ) | Hietpas | 2011 | DMS | Hsp90 | Yeast | Growth | NNN PCR | Illumina | No | TXT |
1314| [ 21825149] ( https://www.ncbi.nlm.nih.gov/pubmed/21825149 ) | [ 10.1073/pnas.1111218108] ( https://dx.doi.org/10.1073/pnas.1111218108 ) | Zhang | 2011 | DMS | IgG | Phage | Binding | Combinatorial | Roche 454 | No | No |
1415| [ 22325784] ( https://www.ncbi.nlm.nih.gov/pubmed/22325784 ) | [ 10.1016/j.str.2011.11.021] ( https://dx.doi.org/10.1016/j.str.2011.11.021 ) | Adkar | 2012 | DMS | Ccdb | E.coli | toxin activity | PCR with specific codons | Roche 454 | No | XLS |
@@ -79,6 +80,7 @@ To cite this document, please use the citation details for [MaveDB](https://www.
7980| [ 26576614] ( https://www.ncbi.nlm.nih.gov/pubmed/26576614 ) | [ 10.1101/gr.193789.115] ( https://dx.doi.org/10.1101/gr.193789.115 ) | Shen | 2016 | MPRA | Promoters and enhancers | Mouse retina, mouse cortex | Transcription | capture of existing elements | Illumina | GSM1463994 | XLS |
8081| [ 26626484] ( https://www.ncbi.nlm.nih.gov/pubmed/26626484 ) | [ 10.1016/j.molcel.2015.10.029] ( https://dx.doi.org/10.1016/j.molcel.2015.10.029 ) | Vvedenskaya | 2015 | MPRA | TSS | Bacteria | Transcription | MASTER | Illumina | SRP057850 | XLS |
8182| [ 26637602] ( https://www.ncbi.nlm.nih.gov/pubmed/26637602 ) | [ 10.1128/AEM.03074-15] ( https://dx.doi.org/10.1128/AEM.03074-15 ) | Jin | 2015 | DMS | ACD-1 | Bacteria | Growth | doped oligo synthesis | Roche 454 | PRJEB11657 | No |
83+ | [ 28035901] ( https://www.ncbi.nlm.nih.gov/pubmed/28035901 ) | [ 10.7554/eLife.23156] ( https://dx.doi.org/10.7554/eLife.23156 ) | Adams | 2016 | DMS | scFV antibody | Yeast | Yeast display | Cassette Ligation | Illumina | PRJNA344711 | CSV |
8284| [ 26656922] ( https://www.ncbi.nlm.nih.gov/pubmed/26656922 ) | [ 10.1016/j.jmb.2015.11.027] ( https://dx.doi.org/10.1016/j.jmb.2015.11.027 ) | Jiang | 2016 | DMS | Neuraminidase | Influenza | Growth | NNN PCR | Illumina | PRJNA272490 | XLS |
8385| [ 26689263] ( https://www.ncbi.nlm.nih.gov/pubmed/26689263 ) | [ 10.1038/nmeth.3696] ( https://dx.doi.org/10.1038/nmeth.3696 ) | Taylor | 2016 | DMS | lac repressor | Bacteria | Growth | microarray synthesis | Illumina | GSE75009 | No |
8486| [ 26716404] ( https://www.ncbi.nlm.nih.gov/pubmed/26716404 ) | [ 10.7554/eLife.09532] ( https://dx.doi.org/10.7554/eLife.09532 ) | Sahoo | 2015 | DMS | CcdB, DgkA | Bacteria | Growth | NNN PCR | Roche 454 | No | No |
@@ -134,7 +136,8 @@ To cite this document, please use the citation details for [MaveDB](https://www.
134136| [ 29203891] ( https://www.ncbi.nlm.nih.gov/pubmed/29203891 ) | [ 10.1038/s41598-017-17081-y] ( https://dx.doi.org/10.1038/s41598-017-17081-y ) | Spencer | 2017 | DMS | Cas9 | Bacteria | Growth | error-prone PCR | Illumina | SRP107783 | XLS |
135137| [ 29225039] ( https://www.ncbi.nlm.nih.gov/pubmed/29225039 ) | [ 10.1016/j.molcel.2017.11.014] ( https://dx.doi.org/10.1016/j.molcel.2017.11.014 ) | Rabani | 2017 | MPRA | 3' UTR | Zebrafish | Transcript abundance | known UTRs | Illumina | GSE106677 | XLS |
136138| [ 29242188] ( https://www.ncbi.nlm.nih.gov/pubmed/29242188 ) | [ 10.1101/gr.219683.116] ( https://dx.doi.org/10.1101/gr.219683.116 ) | Ke | 2017 | MPRA | DHFR exon 1-5 | human | splicing | microarray synthesis | Illumina | GSE105785 | XLS |
137- | [ 29269382] ( https://www.ncbi.nlm.nih.gov/pubmed/29269382 ) | [ 10.15252/msb.20177908] ( https://dx.doi.org/10.15252/msb.20177908 ) | Weile | 2017 | DMS | UBE2I, SUMO1, TPK1, CALM1-3 | yeast | complementation | popcode | Barseq+TileSeq | PRJNA390305 | TXT |
139+ | [ 29269382] ( https://www.ncbi.nlm.nih.gov/pubmed/29269382 ) | [ 10.15252/msb.20177908] ( https://dx.doi.org/10.15252/msb.20177908 ) | Weile | 2017 | DMS | UBE2I, SUMO1, TPK1, CALM1-3 | yeast | complementation | popcode | Barseq+TileSeq (Illumina) | PRJNA390305 | TXT |
140+ | [ 29728462] ( https://www.ncbi.nlm.nih.gov/pubmed/29728462 ) | [ 10.1073/pnas.1722055115] ( https://dx.doi.org/10.1073/pnas.1722055115 ) | Belliveau | 2018 | MPRA | lacZYA, relBE, marRAB, yebG, purT, xylE, dgoRKADT promoters | E.coli | FACS | Cassette Ligation | Illumina | SRP121362 | CSV |
138141| [ 29301959] ( https://www.ncbi.nlm.nih.gov/pubmed/29301959 ) | [ 10.1126/science.aao5167] ( https://dx.doi.org/10.1126/science.aao5167 ) | Plesa | 2018 | DMS | PPAT | E.coli | Growth | ortholog synthesis | Illumina | SRP126669 | XLS |
139142| [ 29410437] ( https://www.ncbi.nlm.nih.gov/pubmed/29410437 ) | [ 10.1038/s41467-018-02980-z] ( https://dx.doi.org/10.1038/s41467-018-02980-z ) | Vainberg Slutskin | 2018 | MPRA | microRNA | K562 | FACS | microarray synthesis | Illumina | SRP128656 | No |
140143| [ 29525204] ( https://www.ncbi.nlm.nih.gov/pubmed/29525204 ) | [ 10.1016/j.cels.2018.01.015] ( https://dx.doi.org/10.1016/j.cels.2018.01.015 ) | Staller | 2018 | DMS | Gcn4 | Yeast | FACS | microarray synthesis | Illumina | [ 10.17632/rbfr6m4733.1] ( https://doi.org/10.17632/rbfr6m4733.1 ) | TXT |
@@ -164,4 +167,5 @@ To cite this document, please use the citation details for [MaveDB](https://www.
164167| [ 30936490] ( https://www.ncbi.nlm.nih.gov/pubmed/30936490 ) | [ 10.1038/s41564-019-0412-y] ( 10.1038/s41564-019-0412-y ) | Noda-Garcia | 2019 | DMS | GDH | Bacteria | Growth | NNS PCR | Illumina | No | XLS |
165168| [ 30956043] ( https://www.ncbi.nlm.nih.gov/pubmed/30956043 ) | [ 10.1016/j.molcel.2019.02.003] ( https://dx.doi.org/10.1016/j.molcel.2019.02.003 ) | Ahler | 2019 | DMS | Src | Yeast | Growth | NNK PCR | Illumina (barcoded and subassembly) | GSE114098 | XLS |
166169| [ 31267113] ( https://www.ncbi.nlm.nih.gov/pubmed/31267113 ) | [ 10.1038/s41587-019-0164-5] ( https://dx.doi.org/10.1038/s41587-019-0164-5 ) | Sample | 2019 | MPRA | 5’ UTR | human cells | polysome profiling | random bases | Illumina | GSE114002 | No |
170+ | [ 30716072] ( https://www.ncbi.nlm.nih.gov/pubmed/30716072 ) | [ 10.1371/journal.pcbi.1006226] ( https://dx.doi.org/10.1371%2Fjournal.pcbi.1006226 ) | Barnes | 2019 | MPRA | LacI binding site | E.coli | FACS | Cassette Ligation | Illumina | SRP146291 | CSV |
167171| bioRxiv | [ 10.1101/505362] ( https://dx.doi.org/10.1101/505362 ) | Kircher | 2018 | MPRA | Multiple mammalian promoters and enhancers | | | error-prone PCR | Illlumina | No | TXT |
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