added 6 new entries and updated 2 entries

Author: afrubin

README.md

@@ -18,9 +18,9 @@ You can also submit changes using the GitHub issue tracker.
 |PMID|DOI|First author|Year|Type|Molecule|Model|Selection Type|Mutagenesis Type|Sequencing Platform|Raw Data|Scores in Table|
 |---|---|---|---|---|---|---|---|---|---|---|---|
 |[19915551](https://www.ncbi.nlm.nih.gov/pubmed/19915551)|[10.1038/nbt.1589](https://doi.org/10.1038/nbt.1589)|Patwardhan|2009|MPRA|T3 promoter, T7 promoter, SP6 promoter, CMV promoter, HBB promoter, S100A4 promoter|in vitro|Transcription|microarray synthesis|Illumina|[SRP001721](https://www.ebi.ac.uk/ena/data/view/SRP001721)|TXT|
+|[20439748](https://www.ncbi.nlm.nih.gov/pubmed/20439748)|[10.1073/pnas.1004290107](https://doi.org/10.1073/pnas.1004290107)|Kinney|2010|MPRA|lac promoter|E.coli|FACS|Cassette ligation|Roche 454|[SRA012345](https://www.ebi.ac.uk/ena/data/view/SRA012345)|No|
 |[20711194](https://www.ncbi.nlm.nih.gov/pubmed/20711194)|[10.1038/nmeth.1492](https://doi.org/10.1038/nmeth.1492)|Fowler|2010|DMS|WW domain|Phage|Binding|doped oligo synthesis|Illumina|[SRP002725](https://www.ebi.ac.uk/ena/data/view/SRP002725)|No|
 |[20714644](https://www.ncbi.nlm.nih.gov/pubmed/20714644)|[10.1039/c0mb00061b](https://doi.org/10.1039/c0mb00061b)|Ernst|2010|DMS|Synthetic PDZ domain|Phage|Binding|Kunkel|Roche 454|No|No|
-|[20439748](https://www.ncbi.nlm.nih.gov/pubmed/20439748)|[10.1073/pnas.1004290107](https://doi.org/10.1073/pnas.1004290107)|Kinney|2010|MPRA|lac promoter|E.coli|FACS|Cassette ligation|Roche 454|[SRA012345](https://www.ebi.ac.uk/ena/data/view/SRA012345)|No|
 |[21464309](https://www.ncbi.nlm.nih.gov/pubmed/21464309)|[10.1073/pnas.1016024108](https://doi.org/10.1073/pnas.1016024108)|Hietpas|2011|DMS|Hsp90|Yeast|Growth|NNN PCR|Illumina|No|TXT|
 |[21825149](https://www.ncbi.nlm.nih.gov/pubmed/21825149)|[10.1073/pnas.1111218108](https://doi.org/10.1073/pnas.1111218108)|Zhang|2011|DMS|IgG|Phage|Binding|Combinatorial|Roche 454|No|No|
 |[22325784](https://www.ncbi.nlm.nih.gov/pubmed/22325784)|[10.1016/j.str.2011.11.021](https://doi.org/10.1016/j.str.2011.11.021)|Adkar|2012|DMS|Ccdb|E.coli|toxin activity|PCR with specific codons|Roche 454|No|XLS|
@@ -65,7 +65,7 @@ You can also submit changes using the GitHub issue tracker.
 |[24862281](https://www.ncbi.nlm.nih.gov/pubmed/24862281)|[10.1016/j.jmb.2014.05.019](https://doi.org/10.1016/j.jmb.2014.05.019)|Roscoe|2014|DMS|Ubiquitin|Yeast|Binding|NNN PCR|Illumina|No|XLS|
 |[24914046](https://www.ncbi.nlm.nih.gov/pubmed/24914046)|[10.1093/nar/gku511](https://doi.org/10.1093/nar/gku511)|Melnikov|2014|DMS|APH(3')II|Bacteria|Growth|microarray synthesis|Illumina|[SRP042113](https://www.ebi.ac.uk/ena/data/view/SRP042113)|TXT|
 |[25006036](https://www.ncbi.nlm.nih.gov/pubmed/25006036)|[10.7554/eLife.03300](https://doi.org/10.7554/eLife.03300)|Thyagarajan|2014|DMS|Hemagglutinin|Influenza|Growth|NNN PCR|Illumina|[SRP040983](https://www.ebi.ac.uk/ena/data/view/SRP040983)|TXT|
-|[25030889](https://www.ncbi.nlm.nih.gov/pubmed/25030889)|[10.1101/gr.168773.113](https://doi.org/10.1101/gr.168773.113)|Sharon|2014|MPRA|designed promoters|Yeast|Fluorescence, Transcription||GSE55346|GSE55346|TXT|
+|[25030889](https://www.ncbi.nlm.nih.gov/pubmed/25030889)|[10.1101/gr.168773.113](https://doi.org/10.1101/gr.168773.113)|Sharon|2014|MPRA|designed promoters|Yeast|Fluorescence, Transcription|?|Illlumina|GSE55346|TXT|
 |[25064858](https://www.ncbi.nlm.nih.gov/pubmed/25064858)|[10.1093/nar/gku689](https://doi.org/10.1093/nar/gku689)|Gajula|2014|DMS|AID|E.coli|Growth|NNS PCR|Illumina|No|PDF (Counts)|
 |[25085423](https://www.ncbi.nlm.nih.gov/pubmed/25085423)|[10.1101/gad.245936.114](https://doi.org/10.1101/gad.245936.114)|Guy|2014|DMS|tRNA|Yeast|FACS|doped oligo synthesis|Illumina|No|XLS|
 |[25170020](https://www.ncbi.nlm.nih.gov/pubmed/25170020)|[10.15252/msb.20145136](https://doi.org/10.15252/msb.20145136)|Noderer|2014|DMS|Start codon efficiency|Mammalian cell culture|FACS|degenrate PCR|Illumina (barcoded)|No|TXT|
@@ -91,7 +91,6 @@ You can also submit changes using the GitHub issue tracker.
 |[26576614](https://www.ncbi.nlm.nih.gov/pubmed/26576614)|[10.1101/gr.193789.115](https://doi.org/10.1101/gr.193789.115)|Shen|2016|MPRA|Promoters and enhancers|Mouse retina, mouse cortex|Transcription|capture of existing elements|Illumina|GSM1463994|XLS|
 |[26626484](https://www.ncbi.nlm.nih.gov/pubmed/26626484)|[10.1016/j.molcel.2015.10.029](https://doi.org/10.1016/j.molcel.2015.10.029)|Vvedenskaya|2015|MPRA|TSS|Bacteria|Transcription|MASTER|Illumina|[SRP057850](https://www.ebi.ac.uk/ena/data/view/SRP057850)|XLS|
 |[26637602](https://www.ncbi.nlm.nih.gov/pubmed/26637602)|[10.1128/AEM.03074-15](https://doi.org/10.1128/AEM.03074-15)|Jin|2015|DMS|ACD-1|Bacteria|Growth|doped oligo synthesis|Roche 454|[PRJEB11657](https://www.ebi.ac.uk/ena/data/view/PRJEB11657)|No|
-|[28035901](https://www.ncbi.nlm.nih.gov/pubmed/28035901)|[10.7554/eLife.23156](https://doi.org/10.7554/eLife.23156)|Adams|2016|DMS|scFV antibody|Yeast|Yeast display|Cassette Ligation|Illumina|[PRJNA344711](https://www.ebi.ac.uk/ena/data/view/PRJNA344711)|CSV|
 |[26656922](https://www.ncbi.nlm.nih.gov/pubmed/26656922)|[10.1016/j.jmb.2015.11.027](https://doi.org/10.1016/j.jmb.2015.11.027)|Jiang|2016|DMS|Neuraminidase|Influenza|Growth|NNN PCR|Illumina|[PRJNA272490](https://www.ebi.ac.uk/ena/data/view/PRJNA272490)|XLS|
 |[26689263](https://www.ncbi.nlm.nih.gov/pubmed/26689263)|[10.1038/nmeth.3696](https://doi.org/10.1038/nmeth.3696)|Taylor|2016|DMS|lac repressor|Bacteria|Growth|microarray synthesis|Illumina|GSE75009|No|
 |[26716404](https://www.ncbi.nlm.nih.gov/pubmed/26716404)|[10.7554/eLife.09532](https://doi.org/10.7554/eLife.09532)|Sahoo|2015|DMS|CcdB, DgkA|Bacteria|Growth|NNN PCR|Roche 454|No|No|
@@ -128,12 +127,14 @@ You can also submit changes using the GitHub issue tracker.
 |[28007883](https://www.ncbi.nlm.nih.gov/pubmed/28007883)|[10.1534/genetics.116.196428](https://doi.org/10.1534/genetics.116.196428)|Keskin|2017|DMS|Fis1p|Yeast|Growth|site-directed mutagenesis|Illumina|10.5061/dryad.j14r5|XLS (Counts)|
 |[28009265](https://www.ncbi.nlm.nih.gov/pubmed/28009265)|[10.1016/j.cels.2016.11.004](https://doi.org/10.1016/j.cels.2016.11.004)|Kelsic|2016|DMS|infA|Bacteria|Growth|MAGE|amplicon|E-MTAB-4020|TXT|
 |[28024160](https://www.ncbi.nlm.nih.gov/pubmed/28024160)|[10.1038/nmeth.4121](https://doi.org/10.1038/nmeth.4121)|Yartseva|2017|MPRA|mRNA stability|Zebrafish|Transcription|selected RNA sequences|Illumina|[SRP090954](https://www.ebi.ac.uk/ena/data/view/SRP090954)|No|
+|[28035901](https://www.ncbi.nlm.nih.gov/pubmed/28035901)|[10.7554/eLife.23156](https://doi.org/10.7554/eLife.23156)|Adams|2016|DMS|scFV antibody|Yeast|Yeast display|Cassette Ligation|Illumina|[PRJNA344711](https://www.ebi.ac.uk/ena/data/view/PRJNA344711)|CSV|
 |[28057863](https://www.ncbi.nlm.nih.gov/pubmed/28057863)|[10.1073/pnas.1613231114](https://doi.org/10.1073/pnas.1613231114)|Koenig|2017|DMS|IgG|Phage|Binding|NNK PCR|Illumina|No|No|
 |[28137873](https://www.ncbi.nlm.nih.gov/pubmed/28137873)|[10.1073/pnas.1621150114](https://doi.org/10.1073/pnas.1621150114)|Grossman|2017|MPRA|natural and synthetic enhancers|mouse|Transcription|microarray synthesis|Illumina (barcoded)|GSE84888|No|
 |[28196882](https://www.ncbi.nlm.nih.gov/pubmed/28196882)|[10.1073/pnas.1614437114](https://doi.org/10.1073/pnas.1614437114)|Klesmith|2017|DMS|TEM-1 BL, LGK|Yeast, Bacteria|FACS, Growth|NNN PCR|Illumina|No|No|
 |[28204611](https://www.ncbi.nlm.nih.gov/pubmed/28204611)|[10.1093/nar/gkw942](https://doi.org/10.1093/nar/gkw942)|Maricque|2017|MPRA|genomic regions|Human cells|Transcription|microarray synthesis|Illumina|No|No|
 |[28212748](https://www.ncbi.nlm.nih.gov/pubmed/28212748)|[10.1016/j.molcel.2017.01.007](https://doi.org/10.1016/j.molcel.2017.01.007)|Levo|2017|MPRA|yeast promoters|Yeast|Transcription|microarray synthesis|Illumina|GSE92300|XLS|
 |[28262665](https://www.ncbi.nlm.nih.gov/pubmed/28262665)|[10.1038/ncomms14614](https://doi.org/10.1038/ncomms14614)|Chan|2017|DMS|IGPS|Yeast|Growth|NNN PCR|Illumina|No|No|
+|[28288189](https://www.ncbi.nlm.nih.gov/pubmed/28288189)|[10.1371/journal.ppat.1006271  ](https://doi.org/10.1371/journal.ppat.1006271  )|Doud|2017|DMS|HA|Influenza|Antibody binding|NNN PCR|Illlumina|SAMN05789126 |TXT|
 |[28335006](https://www.ncbi.nlm.nih.gov/pubmed/28335006)|[10.1093/nar/gkx183](https://doi.org/10.1093/nar/gkx183)|Matreyek|2017|DMS|GFP N-terminal codon|Human cell lines (HEK293T)|FACS|oligo synthesis|Illumina (barcoded)|[SRP095490](https://www.ebi.ac.uk/ena/data/view/SRP095490)|TXT|
 |[28346537](https://www.ncbi.nlm.nih.gov/pubmed/28346537)|[10.1371/journal.ppat.1006288](https://doi.org/10.1371/journal.ppat.1006288)|Ashenberg|2017|DMS|MxA|Virus|Growth|NNN PCR|Illumina|[SRP082554](https://www.ebi.ac.uk/ena/data/view/SRP082554)|TXT|
 |[28585537](https://www.ncbi.nlm.nih.gov/pubmed/28585537)|[10.1038/ncomms15695](https://doi.org/10.1038/ncomms15695)|Wrenbeck|2017|DMS|amiE|E.coli|Growth|Pfunkel|Illumina|[PRJNA360623](https://www.ebi.ac.uk/ena/data/view/PRJNA360623)|TXT|
@@ -148,14 +149,14 @@ You can also submit changes using the GitHub issue tracker.
 |[29225039](https://www.ncbi.nlm.nih.gov/pubmed/29225039)|[10.1016/j.molcel.2017.11.014](https://doi.org/10.1016/j.molcel.2017.11.014)|Rabani|2017|MPRA|3' UTR|Zebrafish|Transcript abundance|known UTRs|Illumina|GSE106677|XLS|
 |[29242188](https://www.ncbi.nlm.nih.gov/pubmed/29242188)|[10.1101/gr.219683.116](https://doi.org/10.1101/gr.219683.116)|Ke|2017|MPRA|DHFR exon 1-5|human|splicing|microarray synthesis|Illumina|GSE105785|XLS|
 |[29269382](https://www.ncbi.nlm.nih.gov/pubmed/29269382)|[10.15252/msb.20177908](https://doi.org/10.15252/msb.20177908)|Weile|2017|DMS|UBE2I, SUMO1, TPK1, CALM1-3|yeast|complementation|popcode|Barseq+TileSeq (Illumina)|[PRJNA390305](https://www.ebi.ac.uk/ena/data/view/PRJNA390305)|TXT|
-|[29728462](https://www.ncbi.nlm.nih.gov/pubmed/29728462)|[10.1073/pnas.1722055115](https://doi.org/10.1073/pnas.1722055115)|Belliveau|2018|MPRA|lacZYA, relBE, marRAB, yebG, purT, xylE, dgoRKADT promoters|E.coli|FACS|Cassette Ligation|Illumina|[SRP121362](https://www.ebi.ac.uk/ena/data/view/SRP121362)|CSV|
 |[29301959](https://www.ncbi.nlm.nih.gov/pubmed/29301959)|[10.1126/science.aao5167](https://doi.org/10.1126/science.aao5167)|Plesa|2018|DMS|PPAT|E.coli|Growth|ortholog synthesis|Illumina|[SRP126669](https://www.ebi.ac.uk/ena/data/view/SRP126669)|XLS|
 |[29410437](https://www.ncbi.nlm.nih.gov/pubmed/29410437)|[10.1038/s41467-018-02980-z](https://doi.org/10.1038/s41467-018-02980-z)|Vainberg Slutskin|2018|MPRA|microRNA|K562|FACS|microarray synthesis|Illumina|[SRP128656](https://www.ebi.ac.uk/ena/data/view/SRP128656)|No|
 |[29525204](https://www.ncbi.nlm.nih.gov/pubmed/29525204)|[10.1016/j.cels.2018.01.015](https://doi.org/10.1016/j.cels.2018.01.015)|Staller|2018|DMS|Gcn4|Yeast|FACS|microarray synthesis|Illumina|10.17632/rbfr6m4733.1|TXT|
 |[29638215](https://www.ncbi.nlm.nih.gov/pubmed/29638215)|[10.7554/eLife.32472](https://doi.org/10.7554/eLife.32472)|Diss|2018|DMS|AP-1|Yeast|Growth|doped oligo synthesis|Illumina|GSE102901|XLS|
 |[29643335](https://www.ncbi.nlm.nih.gov/pubmed/29643335)|[10.1038/s41467-018-03783-y](https://doi.org/10.1038/s41467-018-03783-y)|Hartman|2018|DMS|MS2 phage capsid|MS2|SyMAPS|NNN PCR|Illumina|No|XLS|
 |[29643370](https://www.ncbi.nlm.nih.gov/pubmed/29643370)|[10.1038/s41467-018-03665-3](https://doi.org/10.1038/s41467-018-03665-3)|Doud|2018|DMS|H1 hemaglutinin|Influenza|Growth|NNN PCR|Illumina|[SAMN05789126](https://www.ebi.ac.uk/ena/data/view/SAMN05789126)|TXT|
 |[29706350](https://www.ncbi.nlm.nih.gov/pubmed/29706350)|[10.1016/j.ajhg.2018.03.018](https://doi.org/10.1016/j.ajhg.2018.03.018)|Mighell|2018|DMS|PTEN|Yeast|lipid phosphatase activity|MITE|Illumina|[SRP134135](https://www.ebi.ac.uk/ena/data/view/SRP134135)|XLS|
+|[29728462](https://www.ncbi.nlm.nih.gov/pubmed/29728462)|[10.1073/pnas.1722055115](https://doi.org/10.1073/pnas.1722055115)|Belliveau|2018|MPRA|lacZYA, relBE, marRAB, yebG, purT, xylE, dgoRKADT promoters|E.coli|FACS|Cassette Ligation|Illumina|[SRP121362](https://www.ebi.ac.uk/ena/data/view/SRP121362)|CSV|
 |[29785012](https://www.ncbi.nlm.nih.gov/pubmed/29785012)|[10.1038/s41588-018-0122-z](https://doi.org/10.1038/s41588-018-0122-z)|Matreyek|2018|DMS|PTEN + TPMT|human|Protein stability|inverse PCR|Illumina (barcoded and subassembly)|[PRJNA428380](https://www.ebi.ac.uk/ena/data/view/PRJNA428380)|XLS|
 |[29931269](https://www.ncbi.nlm.nih.gov/pubmed/29931269)|[10.1093/nar/gky550](https://doi.org/10.1093/nar/gky550)|Mason|2018|DMS|CDR|PnP hybridoma cells|FACS|CRISPR|Illumina|No|No|
 |[29979965](https://www.ncbi.nlm.nih.gov/pubmed/29979965)|[10.1016/j.molcel.2018.06.012](https://doi.org/10.1016/j.molcel.2018.06.012)|Kotler|2018|DMS|TP53|HEK293T|Growth|microarray synthesis|Illumina|GSE115072|XLS|
@@ -174,9 +175,13 @@ You can also submit changes using the GitHub issue tracker.
 |[30258049](https://www.ncbi.nlm.nih.gov/pubmed/30258049)|[10.1038/s41467-018-06403-x](https://doi.org/10.1038/s41467-018-06403-x)|Naftaly|2018|DMS|APPI|Yeast|FACS|NNS PCR|Illumina|No|No|
 |[30478237](https://www.ncbi.nlm.nih.gov/pubmed/30478237)|[10.15252/msb.20188371](https://doi.org/10.15252/msb.20188371)|Bassalo|2018|DMS|Lysine metabolic pathway|Bacteria|Growth|microarray synthesis|Illumina|No|XLS|
 |[30503770](https://www.ncbi.nlm.nih.gov/pubmed/30503770)|[10.1016/j.molcel.2018.10.037](https://doi.org/10.1016/j.molcel.2018.10.037)|Cheung|2019|MPRA|Splice sites|human cells|FACS|microarray synthesis|Illlumina|GSE120695|No|
+|[30716072](https://www.ncbi.nlm.nih.gov/pubmed/30716072)|[10.1371/journal.pcbi.1006226](https://doi.org/10.1371/journal.pcbi.1006226)|Barnes|2019|MPRA|LacI binding site|E.coli|FACS|Cassette Ligation|Illumina|[SRP146291](https://www.ebi.ac.uk/ena/data/view/SRP146291)|CSV|
 |[30778069](https://www.ncbi.nlm.nih.gov/pubmed/30778069)|[10.1038/s41467-019-08777-y](https://doi.org/10.1038/s41467-019-08777-y)|Michaels|2019|MPRA|microRNA|HEK293T|polysome profiling|degenerate oligos|Illumina|[PRJNA516224](https://www.ebi.ac.uk/ena/data/view/PRJNA516224)|No|
 |[30936490](https://www.ncbi.nlm.nih.gov/pubmed/30936490)|[10.1038/s41564-019-0412-y](https://doi.org/10.1038/s41564-019-0412-y)|Noda-Garcia|2019|DMS|GDH|Bacteria|Growth|NNS PCR|Illumina|No|XLS|
 |[30956043](https://www.ncbi.nlm.nih.gov/pubmed/30956043)|[10.1016/j.molcel.2019.02.003](https://doi.org/10.1016/j.molcel.2019.02.003)|Ahler|2019|DMS|Src|Yeast|Growth|NNK PCR|Illumina (barcoded and subassembly)|GSE114098|XLS|
 |[31267113](https://www.ncbi.nlm.nih.gov/pubmed/31267113)|[10.1038/s41587-019-0164-5](https://doi.org/10.1038/s41587-019-0164-5)|Sample|2019|MPRA|5’ UTR|human cells|polysome profiling|random bases|Illumina|GSE114002|No|
-|[30716072](https://www.ncbi.nlm.nih.gov/pubmed/30716072)|[10.1371/journal.pcbi.1006226](https://doi.org/10.1371/journal.pcbi.1006226)|Barnes|2019|MPRA|LacI binding site|E.coli|FACS|Cassette Ligation|Illumina|[SRP146291](https://www.ebi.ac.uk/ena/data/view/SRP146291)|CSV|
-|bioRxiv|[10.1101/505362](https://doi.org/10.1101/505362)|Kircher|2018|MPRA|Multiple mammalian promoters and enhancers|||error-prone PCR|Illumina|No|TXT|
+|[31395865](https://www.ncbi.nlm.nih.gov/pubmed/31395865)|[10.1038/s41467-019-11526-w](https://doi.org/10.1038/s41467-019-11526-w)|Kircher|2019|MPRA|Multiple mammalian promoters and enhancers|multiple cell lines|Transcription|error-prone PCR|Illumina|GSE126550 |TXT|
+|[31697803](https://www.ncbi.nlm.nih.gov/pubmed/31697803)|[10.1182/blood.2019002561  ](https://doi.org/10.1182/blood.2019002561  )|Bridgford|2020|DMS|MPL|Ba/F3 cells|Growth|NNN PCR|Illlumina|[SRR10193506](https://www.ebi.ac.uk/ena/data/view/SRR10193506)|TXT|
+|[32385156](https://www.ncbi.nlm.nih.gov/pubmed/32385156)|[10.1073/pnas.1918680117 ](https://doi.org/10.1073/pnas.1918680117 )|Mehlhoff|2020|DMS|TEM-1 BL|E.coli|Growth|NNN PCR|Illlumina|PRJNA565437 |XLS|
+|[32554590](https://www.ncbi.nlm.nih.gov/pubmed/32554590)|[10.1126/science.aaz5143](https://doi.org/10.1126/science.aaz5143)|Wu|2020|DMS|HA|Influenza|Growth|NNS/NNK PCR|Illlumina|PRJNA510654, PRJNA493101, PRJNA510700 |TXT|
+|-|[10.1101/2020.06.17.157982](https://doi.org/10.1101/2020.06.17.157982)|Starr|2020|DMS|SARS-CoV-2 spike|yeast|Yeast display|NNS PCR|Illlumina|PRJNA639956 |TXT|