Change function name to patch_target_sequence_type

Author: sallybg

src/api/routers/map.py

@@ -16,10 +16,10 @@
 from dcd_mapping.lookup import DataLookupError
 from dcd_mapping.mavedb_data import (
     ScoresetNotSupportedError,
-    correct_target_sequence_type,
     get_raw_scoreset_metadata,
     get_scoreset_metadata,
     get_scoreset_records,
+    patch_target_sequence_type,
     with_mavedb_score_set,
 )
 from dcd_mapping.resource_utils import ResourceAcquisitionError
@@ -49,7 +49,7 @@ async def map_scoreset(urn: str, store_path: Path | None = None) -> JSONResponse
     try:
         metadata = get_scoreset_metadata(urn, store_path)
         records = get_scoreset_records(metadata, True, store_path)
-        metadata = correct_target_sequence_type(metadata, records)
+        metadata = patch_target_sequence_type(metadata, records)
     except ScoresetNotSupportedError as e:
         return JSONResponse(
             content=ScoresetMapping(

src/dcd_mapping/main.py

@@ -22,9 +22,9 @@
 )
 from dcd_mapping.mavedb_data import (
     ScoresetNotSupportedError,
-    correct_target_sequence_type,
     get_scoreset_metadata,
     get_scoreset_records,
+    patch_target_sequence_type,
     with_mavedb_score_set,
 )
 from dcd_mapping.resource_utils import ResourceAcquisitionError
@@ -333,7 +333,7 @@ async def map_scoreset_urn(
     try:
         metadata = get_scoreset_metadata(urn, store_path)
         records = get_scoreset_records(metadata, silent, store_path)
-        metadata = correct_target_sequence_type(metadata, records)
+        metadata = patch_target_sequence_type(metadata, records)
     except ScoresetNotSupportedError as e:
         _emit_info(f"Score set not supported: {e}", silent, logging.ERROR)
         final_output = write_scoreset_mapping_to_json(

src/dcd_mapping/mavedb_data.py

@@ -326,7 +326,7 @@ def get_scoreset_records(
     return _load_scoreset_records(scores_csv, metadata)
 
 
-def correct_target_sequence_type(
+def patch_target_sequence_type(
     metadata: ScoresetMetadata, records: dict
 ) -> ScoresetMetadata:
     """If target sequence type is DNA but all variants are protein-level, change to protein.