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Run Tests (On Push)

Add SeqRepo based seqfetcher to data provider #801

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Add SeqRepo based seqfetcher to data provider

Add SeqRepo based seqfetcher to data provider #801

Workflow file for this run

.github/workflows/run-tests-on-push.yml at b179bbb
name: Run Tests (On Push)
on:
push:
env:
LOG_CONFIG: test
jobs:
run-tests-3_9-core-dependencies:
runs-on: ubuntu-20.04
name: Pytest on Core Dependencies-- Python 3.9 / Ubuntu 20.04
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.9"
cache: 'pip'
- run: pip install --upgrade pip
- run: pip install poetry
- run: poetry install --with dev
- run: poetry run pytest tests/
run-tests-3_9:
runs-on: ubuntu-20.04
name: Pytest on Optional Dependencies-- Python 3.9 / Ubuntu 20.04
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.9"
cache: 'pip'
- run: pip install --upgrade pip
- run: pip install poetry
- run: poetry install --with dev --extras server
- run: poetry run pytest tests/ --show-capture=stdout --cov=src
run-tests-3_10-core-dependencies:
runs-on: ubuntu-latest
name: Pytest on Optional Dependencies-- Python 3.10
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.10"
cache: 'pip'
- run: pip install --upgrade pip
- run: pip install poetry
- run: poetry install --with dev
- run: poetry run pytest tests/
run-tests-3_10:
runs-on: ubuntu-latest
name: Pytest on Optional Dependencies-- Python 3.10
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.10"
cache: 'pip'
- run: pip install --upgrade pip
- run: pip install poetry
- run: poetry install --with dev --extras server
- run: poetry run pytest tests/ --show-capture=stdout --cov=src
run-tests-3_11-core-dependencies:
runs-on: ubuntu-latest
name: Pytest on Core Dependencies-- Python 3.11
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.11"
cache: 'pip'
- run: pip install --upgrade pip
- run: pip install poetry
- run: poetry install --with dev
- run: poetry run pytest tests/
run-tests-3_11:
runs-on: ubuntu-latest
name: Pytest on Optional Dependencies-- Python 3.11
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.11"
cache: 'pip'
- run: pip install --upgrade pip
- run: pip install poetry
- run: poetry install --with dev --extras server
- run: poetry run pytest tests/ --show-capture=stdout --cov=src
run-mypy-3_10:
runs-on: ubuntu-latest
name: MyPy on Full Codebase-- Python 3.10
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.10"
cache: 'pip'
- run: pip install --upgrade pip
- run: pip install poetry
- run: poetry install --with dev --extras server
- run: poetry run mypy src/
run-ruff-lint:
runs-on: ubuntu-latest
name: Ruff on Full Codebase-- Python 3.10
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.10"
cache: 'pip'
- run: pip install --upgrade pip
- run: pip install poetry
- run: poetry install --with dev --extras server
- run: poetry run ruff check