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fix: correct typo in StrengthOfEvidenceProvided enum value and update related test
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-4
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src/mavedb/lib/acmg.py

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@@ -50,7 +50,7 @@ class StrengthOfEvidenceProvided(str, Enum):
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VERY_STRONG = "very_strong"
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STRONG = "strong"
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MODERATE_PLUS = "moderate+"
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MODERATE_PLUS = "moderate_plus"
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MODERATE = "moderate"
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SUPPORTING = "supporting"
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tests/lib/annotation/test_classification.py

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@@ -1,12 +1,11 @@
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import pytest
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from ga4gh.va_spec.acmg_2015 import VariantPathogenicityEvidenceLine
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from ga4gh.va_spec.base.enums import StrengthOfEvidenceProvided
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from mavedb.lib.annotation.classification import (
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ExperimentalVariantFunctionalImpactClassification,
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functional_classification_of_variant,
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pathogenicity_classification_of_variant,
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ExperimentalVariantFunctionalImpactClassification,
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)
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@@ -219,7 +218,7 @@ def test_pathogenicity_classification_of_variant_with_invalid_evidence_strength_
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)
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assert primary_cal is not None
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for r in primary_cal.functional_ranges:
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r["acmgClassification"]["evidenceStrength"] = "moderate+"
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r["acmgClassification"]["evidenceStrength"] = "moderate_plus"
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r["oddspathsRatio"] = None
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with pytest.raises(ValueError) as exc:

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