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lines changed Original file line number Diff line number Diff line change @@ -50,7 +50,7 @@ class StrengthOfEvidenceProvided(str, Enum):
5050
5151 VERY_STRONG = "very_strong"
5252 STRONG = "strong"
53- MODERATE_PLUS = "moderate+ "
53+ MODERATE_PLUS = "moderate_plus "
5454 MODERATE = "moderate"
5555 SUPPORTING = "supporting"
5656
Original file line number Diff line number Diff line change 11import pytest
2-
32from ga4gh .va_spec .acmg_2015 import VariantPathogenicityEvidenceLine
43from ga4gh .va_spec .base .enums import StrengthOfEvidenceProvided
54
65from mavedb .lib .annotation .classification import (
6+ ExperimentalVariantFunctionalImpactClassification ,
77 functional_classification_of_variant ,
88 pathogenicity_classification_of_variant ,
9- ExperimentalVariantFunctionalImpactClassification ,
109)
1110
1211
@@ -219,7 +218,7 @@ def test_pathogenicity_classification_of_variant_with_invalid_evidence_strength_
219218 )
220219 assert primary_cal is not None
221220 for r in primary_cal .functional_ranges :
222- r ["acmgClassification" ]["evidenceStrength" ] = "moderate+ "
221+ r ["acmgClassification" ]["evidenceStrength" ] = "moderate_plus "
223222 r ["oddspathsRatio" ] = None
224223
225224 with pytest .raises (ValueError ) as exc :
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