Bump Dependencies in Preparation for VA-Spec

Bumps the following core dependencies:
- Python: 3.9 -> 3.11
- Pydantic 1.10.18 -> 2.10.4
- FastAPI: 0.95.2 -> 0.115.6
- Starlette: 0.27.0 -> 0.41.3

This list is not close to extensive, and other packages were updated as well
for compatibility; Please see the `poetry.lock` diff.

Author: bencap

.github/workflows/run-tests-on-push.yml

@@ -6,51 +6,37 @@ env:
   LOG_CONFIG: test
 
 jobs:
-  run-tests-3_9:
+  run-tests-3_11:
     runs-on: ubuntu-20.04
-    name: Pytest on Python 3.9 / Ubuntu 20.04
-    steps:
-    - uses: actions/checkout@v4
-    - uses: actions/setup-python@v5
-      with:
-        python-version: "3.9"
-        cache: 'pip'
-    - run: pip install --upgrade pip
-    - run: pip install poetry
-    - run: poetry install --with dev --extras server
-    - run: poetry run pytest tests/ --show-capture=stdout --cov=src
-
-  run-tests-3_10:
-    runs-on: ubuntu-latest
-    name: Pytest on Python 3.10
+    name: Pytest on Python 3.11 / Ubuntu 20.04
     steps:
     - uses: actions/checkout@v4
     - uses: actions/setup-python@v5
       with:
-        python-version: "3.10"
+        python-version: "3.11"
         cache: 'pip'
     - run: pip install --upgrade pip
     - run: pip install poetry
     - run: poetry install --with dev --extras server
     - run: poetry run pytest tests/ --show-capture=stdout --cov=src
 
-  run-tests-3_11:
+  run-tests-3_12:
     runs-on: ubuntu-latest
-    name: Pytest on Python 3.11
+    name: Pytest on Python 3.12
     steps:
     - uses: actions/checkout@v4
     - uses: actions/setup-python@v5
       with:
-        python-version: "3.11"
+        python-version: "3.12"
         cache: 'pip'
     - run: pip install --upgrade pip
     - run: pip install poetry
     - run: poetry install --with dev --extras server
     - run: poetry run pytest tests/ --show-capture=stdout --cov=src
 
-  run-mypy-3_10:
+  run-mypy-3_11:
     runs-on: ubuntu-latest
-    name: MyPy checks on Python 3.10
+    name: MyPy checks on Python 3.11
     steps:
     - uses: actions/checkout@v4
     - uses: actions/setup-python@v5
@@ -64,12 +50,12 @@ jobs:
 
   run-ruff-lint:
     runs-on: ubuntu-latest
-    name: Ruff linting on Python 3.10
+    name: Ruff linting on Python 3.11
     steps:
     - uses: actions/checkout@v4
     - uses: actions/setup-python@v5
       with:
-        python-version: "3.10"
+        python-version: "3.11"
         cache: 'pip'
     - run: pip install --upgrade pip
     - run: pip install poetry

Dockerfile

@@ -2,7 +2,7 @@
 # python-base
 # Set up shared environment variables
 ################################
-FROM python:3.9 as python-base
+FROM python:3.11 as python-base
 
     # Poetry
     # https://python-poetry.org/docs/configuration/#using-environment-variables

README.md

@@ -24,7 +24,7 @@ Or add `mavedb` to your Python project's dependencies.
 
 ### Prerequisites
 
-- Python 3.9 or later
+- Python 3.11 or later
 - PIP
 - [Poetry](https://python-poetry.org/) for building and publishing distributions. For details on installing poetry, consult its [documentation](https://python-poetry.org/docs/#installation).