diff --git a/poetry.lock b/poetry.lock index 3a7ade04..18ecdd5e 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.7.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. [[package]] name = "alembic" @@ -6,6 +6,8 @@ version = "1.14.1" description = "A database migration tool for SQLAlchemy." optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "alembic-1.14.1-py3-none-any.whl", hash = "sha256:1acdd7a3a478e208b0503cd73614d5e4c6efafa4e73518bb60e4f2846a37b1c5"}, {file = "alembic-1.14.1.tar.gz", hash = "sha256:496e888245a53adf1498fcab31713a469c65836f8de76e01399aa1c3e90dd213"}, @@ -17,7 +19,7 @@ SQLAlchemy = ">=1.3.0" typing-extensions = ">=4" [package.extras] -tz = ["backports.zoneinfo", "tzdata"] +tz = ["backports.zoneinfo ; python_version < \"3.9\"", "tzdata"] [[package]] name = "alembic-utils" @@ -25,6 +27,8 @@ version = "0.8.1" description = "A sqlalchemy/alembic extension for migrating procedures and views" optional = true python-versions = ">=3.7" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "alembic_utils-0.8.1.tar.gz", hash = "sha256:073626217c8d8bdc66d1f66f8866d4f743969ac08502ba3bc15bcd60190460d7"}, ] @@ -41,12 +45,26 @@ dev = ["black", "mkdocs", "mypy", "pre-commit", "psycopg2-binary", "pylint", "py docs = ["mkautodoc", "mkdocs", "pygments", "pymdown-extensions"] nvim = ["neovim", "python-language-server"] +[[package]] +name = "annotated-doc" +version = "0.0.3" +description = "Document parameters, class attributes, return types, and variables inline, with Annotated." +optional = true +python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" +files = [ + {file = "annotated_doc-0.0.3-py3-none-any.whl", hash = "sha256:348ec6664a76f1fd3be81f43dffbee4c7e8ce931ba71ec67cc7f4ade7fbbb580"}, + {file = "annotated_doc-0.0.3.tar.gz", hash = "sha256:e18370014c70187422c33e945053ff4c286f453a984eba84d0dbfa0c935adeda"}, +] + [[package]] name = "annotated-types" version = "0.7.0" description = "Reusable constraint types to use with typing.Annotated" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"}, @@ -58,6 +76,7 @@ version = "4.10.0" description = "High-level concurrency and networking framework on top of asyncio or Trio" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "anyio-4.10.0-py3-none-any.whl", hash = "sha256:60e474ac86736bbfd6f210f7a61218939c318f43f9972497381f1c5e930ed3d1"}, {file = "anyio-4.10.0.tar.gz", hash = "sha256:3f3fae35c96039744587aa5b8371e7e8e603c0702999535961dd336026973ba6"}, @@ -77,6 +96,8 @@ version = "1.4.4" description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." optional = true python-versions = "*" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"}, {file = "appdirs-1.4.4.tar.gz", hash = "sha256:7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41"}, @@ -88,6 +109,8 @@ version = "0.25.0" description = "Job queues in python with asyncio and redis" optional = true python-versions = ">=3.7" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "arq-0.25.0-py3-none-any.whl", hash = "sha256:db072d0f39c0bc06b436db67ae1f315c81abc1527563b828955670531815290b"}, {file = "arq-0.25.0.tar.gz", hash = "sha256:d176ebadfba920c039dc578814d19b7814d67fa15f82fdccccaedb4330d65dae"}, @@ -107,6 +130,8 @@ version = "3.0.0" description = "Annotate AST trees with source code positions" optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "asttokens-3.0.0-py3-none-any.whl", hash = "sha256:e3078351a059199dd5138cb1c706e6430c05eff2ff136af5eb4790f9d28932e2"}, {file = "asttokens-3.0.0.tar.gz", hash = "sha256:0dcd8baa8d62b0c1d118b399b2ddba3c4aff271d0d7a9e0d4c1681c79035bbc7"}, @@ -122,6 +147,8 @@ version = "5.0.1" description = "Timeout context manager for asyncio programs" optional = false python-versions = ">=3.8" +groups = ["main", "dev"] +markers = "python_full_version < \"3.11.3\"" files = [ {file = "async_timeout-5.0.1-py3-none-any.whl", hash = "sha256:39e3809566ff85354557ec2398b55e096c8364bacac9405a7a1fa429e77fe76c"}, {file = "async_timeout-5.0.1.tar.gz", hash = "sha256:d9321a7a3d5a6a5e187e824d2fa0793ce379a202935782d555d6e9d2735677d3"}, @@ -133,28 +160,32 @@ version = "25.3.0" description = "Classes Without Boilerplate" optional = false python-versions = ">=3.8" +groups = ["main", "dev"] files = [ {file = "attrs-25.3.0-py3-none-any.whl", hash = "sha256:427318ce031701fea540783410126f03899a97ffc6f61596ad581ac2e40e3bc3"}, {file = "attrs-25.3.0.tar.gz", hash = "sha256:75d7cefc7fb576747b2c81b4442d4d4a1ce0900973527c011d1030fd3bf4af1b"}, ] +markers = {main = "extra == \"server\""} [package.extras] -benchmark = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins", "pytest-xdist[psutil]"] -cov = ["cloudpickle", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"] -dev = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pre-commit-uv", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"] +benchmark = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"] +cov = ["cloudpickle ; platform_python_implementation == \"CPython\"", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"] +dev = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pre-commit-uv", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"] docs = ["cogapp", "furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier"] -tests = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"] -tests-mypy = ["mypy (>=1.11.1)", "pytest-mypy-plugins"] +tests = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"] +tests-mypy = ["mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\""] [[package]] name = "authlib" -version = "1.3.2" +version = "1.6.5" description = "The ultimate Python library in building OAuth and OpenID Connect servers and clients." optional = true -python-versions = ">=3.8" +python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"server\"" files = [ - {file = "Authlib-1.3.2-py2.py3-none-any.whl", hash = "sha256:ede026a95e9f5cdc2d4364a52103f5405e75aa156357e831ef2bfd0bc5094dfc"}, - {file = "authlib-1.3.2.tar.gz", hash = "sha256:4b16130117f9eb82aa6eec97f6dd4673c3f960ac0283ccdae2897ee4bc030ba2"}, + {file = "authlib-1.6.5-py2.py3-none-any.whl", hash = "sha256:3e0e0507807f842b02175507bdee8957a1d5707fd4afb17c32fb43fee90b6e3a"}, + {file = "authlib-1.6.5.tar.gz", hash = "sha256:6aaf9c79b7cc96c900f0b284061691c5d4e61221640a948fe690b556a6d6d10b"}, ] [package.dependencies] @@ -166,6 +197,8 @@ version = "4.13.4" description = "Screen-scraping library" optional = true python-versions = ">=3.7.0" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "beautifulsoup4-4.13.4-py3-none-any.whl", hash = "sha256:9bbbb14bfde9d79f38b8cd5f8c7c85f4b8f2523190ebed90e950a8dea4cb1c4b"}, {file = "beautifulsoup4-4.13.4.tar.gz", hash = "sha256:dbb3c4e1ceae6aefebdaf2423247260cd062430a410e38c66f2baa50a8437195"}, @@ -188,6 +221,8 @@ version = "0.0.0" description = "ensures that the biocommons namespace is correctly declared" optional = true python-versions = "*" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "biocommons-0.0.0-py3-none-any.whl", hash = "sha256:2cfa1cd2d97bdd42ea0ea6ec143021b79ad5a94a92303d492dc2eb505026d63a"}, {file = "biocommons-0.0.0.tar.gz", hash = "sha256:8054468bf8a8966507b0a8720d284798b7f525dc13ccc3983f1aa640a1f22c19"}, @@ -199,6 +234,8 @@ version = "0.6.7" description = "Non-redundant, compressed, journalled, file-based storage for biological sequences" optional = true python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "biocommons.seqrepo-0.6.7-py3-none-any.whl", hash = "sha256:be142788237452f6a107fd83ab075da5abc2b92f7eecfa86e97d4b33b2941dbb"}, {file = "biocommons.seqrepo-0.6.7.tar.gz", hash = "sha256:2c3f982c1ed3adb1971a0dd2e7a554d096a1c5801075e384a62dd3f73d5e8c81"}, @@ -225,6 +262,8 @@ version = "0.6.1" description = "miscellaneous simple bioinformatics utilities and lookup tables" optional = false python-versions = ">=3.10" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "bioutils-0.6.1-py3-none-any.whl", hash = "sha256:9928297331b9fc0a4fd4235afdef9a80a0916d8b5c2811ab781bded0dad4b9b6"}, {file = "bioutils-0.6.1.tar.gz", hash = "sha256:6ad7a9b6da73beea798a935499339d8b60a434edc37dfc803474d2e93e0e64aa"}, @@ -245,6 +284,8 @@ version = "1.34.162" description = "The AWS SDK for Python" optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "boto3-1.34.162-py3-none-any.whl", hash = "sha256:d6f6096bdab35a0c0deff469563b87d184a28df7689790f7fe7be98502b7c590"}, {file = "boto3-1.34.162.tar.gz", hash = "sha256:873f8f5d2f6f85f1018cbb0535b03cceddc7b655b61f66a0a56995238804f41f"}, @@ -264,6 +305,7 @@ version = "1.34.162" description = "Type annotations for boto3 1.34.162 generated with mypy-boto3-builder 7.26.0" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "boto3_stubs-1.34.162-py3-none-any.whl", hash = "sha256:47c651272782a2e894082087eeaeb87a7e809e7e282748560cf39c155031abef"}, {file = "boto3_stubs-1.34.162.tar.gz", hash = "sha256:6d60b7b9652e1c99f3caba00779e1b94ba7062b0431147a00543af8b1f5252f4"}, @@ -671,6 +713,8 @@ version = "1.34.162" description = "Low-level, data-driven core of boto 3." optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "botocore-1.34.162-py3-none-any.whl", hash = "sha256:2d918b02db88d27a75b48275e6fb2506e9adaaddbec1ffa6a8a0898b34e769be"}, {file = "botocore-1.34.162.tar.gz", hash = "sha256:adc23be4fb99ad31961236342b7cbf3c0bfc62532cd02852196032e8c0d682f3"}, @@ -690,6 +734,7 @@ version = "1.38.46" description = "Type annotations and code completion for botocore" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "botocore_stubs-1.38.46-py3-none-any.whl", hash = "sha256:cc21d9a7dd994bdd90872db4664d817c4719b51cda8004fd507a4bf65b085a75"}, {file = "botocore_stubs-1.38.46.tar.gz", hash = "sha256:a04e69766ab8bae338911c1897492f88d05cd489cd75f06e6eb4f135f9da8c7b"}, @@ -707,6 +752,8 @@ version = "0.0.2" description = "Dummy package for Beautiful Soup (beautifulsoup4)" optional = true python-versions = "*" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "bs4-0.0.2-py2.py3-none-any.whl", hash = "sha256:abf8742c0805ef7f662dce4b51cca104cffe52b835238afc169142ab9b3fbccc"}, {file = "bs4-0.0.2.tar.gz", hash = "sha256:a48685c58f50fe127722417bae83fe6badf500d54b55f7e39ffe43b798653925"}, @@ -721,6 +768,8 @@ version = "2.0.0" description = "Canonical JSON" optional = false python-versions = ">=3.7" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "canonicaljson-2.0.0-py3-none-any.whl", hash = "sha256:c38a315de3b5a0532f1ec1f9153cd3d716abfc565a558d00a4835428a34fca5b"}, {file = "canonicaljson-2.0.0.tar.gz", hash = "sha256:e2fdaef1d7fadc5d9cb59bd3d0d41b064ddda697809ac4325dced721d12f113f"}, @@ -732,6 +781,8 @@ version = "0.2.26" description = "Transcripts for HGVS libraries" optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "cdot-0.2.26-py3-none-any.whl", hash = "sha256:f9f6c3dbdb9dffda3779e77d9acef33ae3111c11a4de18fba5ff1d77cbc83c00"}, {file = "cdot-0.2.26.tar.gz", hash = "sha256:6f9b9fb4076722f5d92d189fa4ef5a7e2af1cdd4f790068bb7d9a5d3ba73921b"}, @@ -749,6 +800,7 @@ version = "2025.8.3" description = "Python package for providing Mozilla's CA Bundle." optional = false python-versions = ">=3.7" +groups = ["main", "dev"] files = [ {file = "certifi-2025.8.3-py3-none-any.whl", hash = "sha256:f6c12493cfb1b06ba2ff328595af9350c65d6644968e5d3a2ffd78699af217a5"}, {file = "certifi-2025.8.3.tar.gz", hash = "sha256:e564105f78ded564e3ae7c923924435e1daa7463faeab5bb932bc53ffae63407"}, @@ -760,6 +812,8 @@ version = "1.17.1" description = "Foreign Function Interface for Python calling C code." optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\" and platform_python_implementation != \"PyPy\"" files = [ {file = "cffi-1.17.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:df8b1c11f177bc2313ec4b2d46baec87a5f3e71fc8b45dab2ee7cae86d9aba14"}, {file = "cffi-1.17.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:8f2cdc858323644ab277e9bb925ad72ae0e67f69e804f4898c070998d50b1a67"}, @@ -839,6 +893,7 @@ version = "3.4.0" description = "Validate configuration and produce human readable error messages." optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "cfgv-3.4.0-py2.py3-none-any.whl", hash = "sha256:b7265b1f29fd3316bfcd2b330d63d024f2bfd8bcb8b0272f8e19a504856c48f9"}, {file = "cfgv-3.4.0.tar.gz", hash = "sha256:e52591d4c5f5dead8e0f673fb16db7949d2cfb3f7da4582893288f0ded8fe560"}, @@ -850,6 +905,7 @@ version = "3.4.3" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." optional = false python-versions = ">=3.7" +groups = ["main", "dev"] files = [ {file = "charset_normalizer-3.4.3-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:fb7f67a1bfa6e40b438170ebdc8158b78dc465a5a67b6dde178a46987b244a72"}, {file = "charset_normalizer-3.4.3-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:cc9370a2da1ac13f0153780040f465839e6cccb4a1e44810124b4e22483c93fe"}, @@ -938,6 +994,8 @@ version = "8.2.1" description = "Composable command line interface toolkit" optional = true python-versions = ">=3.10" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "click-8.2.1-py3-none-any.whl", hash = "sha256:61a3265b914e850b85317d0b3109c7f8cd35a670f963866005d6ef1d5175a12b"}, {file = "click-8.2.1.tar.gz", hash = "sha256:27c491cc05d968d271d5a1db13e3b5a184636d9d930f148c50b038f0d0646202"}, @@ -952,10 +1010,12 @@ version = "0.4.6" description = "Cross-platform colored terminal text." optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" +groups = ["main", "dev"] files = [ {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"}, {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"}, ] +markers = {main = "extra == \"server\" and (platform_system == \"Windows\" or sys_platform == \"win32\")", dev = "sys_platform == \"win32\""} [[package]] name = "coloredlogs" @@ -963,6 +1023,8 @@ version = "15.0.1" description = "Colored terminal output for Python's logging module" optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "coloredlogs-15.0.1-py2.py3-none-any.whl", hash = "sha256:612ee75c546f53e92e70049c9dbfcc18c935a2b9a53b66085ce9ef6a6e5c0934"}, {file = "coloredlogs-15.0.1.tar.gz", hash = "sha256:7c991aa71a4577af2f82600d8f8f3a89f936baeaf9b50a9c197da014e5bf16b0"}, @@ -980,13 +1042,15 @@ version = "7.2.0" description = "Updated configparser from stdlib for earlier Pythons." optional = true python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "configparser-7.2.0-py3-none-any.whl", hash = "sha256:fee5e1f3db4156dcd0ed95bc4edfa3580475537711f67a819c966b389d09ce62"}, {file = "configparser-7.2.0.tar.gz", hash = "sha256:b629cc8ae916e3afbd36d1b3d093f34193d851e11998920fdcfc4552218b7b70"}, ] [package.extras] -check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"] +check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\""] cover = ["pytest-cov"] doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] enabler = ["pytest-enabler (>=2.2)"] @@ -999,6 +1063,7 @@ version = "7.10.4" description = "Code coverage measurement for Python" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "coverage-7.10.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:d92d6edb0ccafd20c6fbf9891ca720b39c2a6a4b4a6f9cf323ca2c986f33e475"}, {file = "coverage-7.10.4-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:7202da14dc0236884fcc45665ffb2d79d4991a53fbdf152ab22f69f70923cc22"}, @@ -1091,7 +1156,7 @@ files = [ ] [package.extras] -toml = ["tomli"] +toml = ["tomli ; python_full_version <= \"3.11.0a6\""] [[package]] name = "cryptography" @@ -1099,6 +1164,8 @@ version = "44.0.3" description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers." optional = true python-versions = "!=3.9.0,!=3.9.1,>=3.7" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "cryptography-44.0.3-cp37-abi3-macosx_10_9_universal2.whl", hash = "sha256:962bc30480a08d133e631e8dfd4783ab71cc9e33d5d7c1e192f0b7c06397bb88"}, {file = 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(>=0.7)", "pytest (>=7.4.0)", "pytest-benchmark (>=4.0)", "pytest-cov (>=2.10.1)", "pytest-xdist (>=3.5.0)"] @@ -1158,6 +1225,8 @@ version = "1.3.0" description = "cssselect parses CSS3 Selectors and translates them to XPath 1.0" optional = true python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "cssselect-1.3.0-py3-none-any.whl", hash = "sha256:56d1bf3e198080cc1667e137bc51de9cadfca259f03c2d4e09037b3e01e30f0d"}, {file = "cssselect-1.3.0.tar.gz", hash = "sha256:57f8a99424cfab289a1b6a816a43075a4b00948c86b4dcf3ef4ee7e15f7ab0c7"}, @@ -1169,6 +1238,8 @@ version = "5.2.1" description = "Decorators for Humans" optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "decorator-5.2.1-py3-none-any.whl", hash = "sha256:d316bb415a2d9e2d2b3abcc4084c6502fc09240e292cd76a76afc106a1c8e04a"}, {file = "decorator-5.2.1.tar.gz", hash = "sha256:65f266143752f734b0a7cc83c46f4618af75b8c5911b00ccb61d0ac9b6da0360"}, @@ -1180,6 +1251,7 @@ version = "0.4.0" description = "Distribution utilities" optional = false python-versions = "*" +groups = ["dev"] files = [ {file = "distlib-0.4.0-py2.py3-none-any.whl", hash = "sha256:9659f7d87e46584a30b5780e43ac7a2143098441670ff0a49d5f9034c54a6c16"}, {file = "distlib-0.4.0.tar.gz", hash = "sha256:feec40075be03a04501a973d81f633735b4b69f98b05450592310c0f401a4e0d"}, @@ -1191,6 +1263,7 @@ version = "2.7.0" description = "DNS toolkit" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "dnspython-2.7.0-py3-none-any.whl", hash = "sha256:b4c34b7d10b51bcc3a5071e7b8dee77939f1e878477eeecc965e9835f63c6c86"}, {file = "dnspython-2.7.0.tar.gz", hash = "sha256:ce9c432eda0dc91cf618a5cedf1a4e142651196bbcd2c80e89ed5a907e5cfaf1"}, @@ -1211,6 +1284,8 @@ version = "0.19.1" description = "ECDSA cryptographic signature library (pure python)" optional = true python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.6" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "ecdsa-0.19.1-py2.py3-none-any.whl", hash = "sha256:30638e27cf77b7e15c4c4cc1973720149e1033827cfd00661ca5c8cc0cdb24c3"}, {file = "ecdsa-0.19.1.tar.gz", hash = "sha256:478cba7b62555866fcb3bb3fe985e06decbdb68ef55713c4e5ab98c57d508e61"}, @@ -1229,6 +1304,7 @@ version = "2.1.2" description = "A robust email address syntax and deliverability validation library." optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "email_validator-2.1.2-py3-none-any.whl", hash = "sha256:d89f6324e13b1e39889eab7f9ca2f91dc9aebb6fa50a6d8bd4329ab50f251115"}, {file = "email_validator-2.1.2.tar.gz", hash = "sha256:14c0f3d343c4beda37400421b39fa411bbe33a75df20825df73ad53e06a9f04c"}, @@ -1244,6 +1320,7 @@ version = "0.6.0" description = "\"Python interface to NCBI's eutilities API\"" optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = 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[[package]] name = "fake-useragent" @@ -1277,6 +1356,8 @@ version = "2.2.0" description = "Up-to-date simple useragent faker with real world database" optional = true python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "fake_useragent-2.2.0-py3-none-any.whl", hash = "sha256:67f35ca4d847b0d298187443aaf020413746e56acd985a611908c73dba2daa24"}, {file = "fake_useragent-2.2.0.tar.gz", hash = "sha256:4e6ab6571e40cc086d788523cf9e018f618d07f9050f822ff409a4dfe17c16b2"}, @@ -1288,6 +1369,7 @@ version = "2.21.3" description = "Python implementation of redis API, can be used for testing purposes." optional = false python-versions = ">=3.7,<4.0" +groups = ["dev"] files = [ {file = "fakeredis-2.21.3-py3-none-any.whl", hash = "sha256:033fe5882a20ec308ed0cf67a86c1cd982a1bffa63deb0f52eaa625bd8ce305f"}, {file = "fakeredis-2.21.3.tar.gz", hash = "sha256:e9e1c309d49d83c4ce1ab6f3ee2e56787f6a5573a305109017bf140334dd396d"}, @@ -1306,23 +1388,27 @@ probabilistic = ["pyprobables (>=0.6,<0.7)"] [[package]] name = "fastapi" -version = "0.115.14" +version = "0.121.0" description = "FastAPI framework, high performance, easy to learn, fast to code, ready for production" optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ - {file = "fastapi-0.115.14-py3-none-any.whl", hash = "sha256:6c0c8bf9420bd58f565e585036d971872472b4f7d3f6c73b698e10cffdefb3ca"}, - {file = "fastapi-0.115.14.tar.gz", hash = "sha256:b1de15cdc1c499a4da47914db35d0e4ef8f1ce62b624e94e0e5824421df99739"}, + {file = "fastapi-0.121.0-py3-none-any.whl", hash = "sha256:8bdf1b15a55f4e4b0d6201033da9109ea15632cb76cf156e7b8b4019f2172106"}, + {file = "fastapi-0.121.0.tar.gz", hash = "sha256:06663356a0b1ee93e875bbf05a31fb22314f5bed455afaaad2b2dad7f26e98fa"}, ] [package.dependencies] +annotated-doc = ">=0.0.2" pydantic = ">=1.7.4,<1.8 || >1.8,<1.8.1 || >1.8.1,<2.0.0 || >2.0.0,<2.0.1 || >2.0.1,<2.1.0 || >2.1.0,<3.0.0" -starlette = ">=0.40.0,<0.47.0" +starlette = ">=0.40.0,<0.50.0" typing-extensions = ">=4.8.0" [package.extras] -all = ["email-validator (>=2.0.0)", "fastapi-cli[standard] (>=0.0.5)", "httpx (>=0.23.0)", "itsdangerous (>=1.1.0)", "jinja2 (>=3.1.5)", "orjson (>=3.2.1)", "pydantic-extra-types (>=2.0.0)", "pydantic-settings (>=2.0.0)", "python-multipart (>=0.0.18)", "pyyaml (>=5.3.1)", "ujson (>=4.0.1,!=4.0.2,!=4.1.0,!=4.2.0,!=4.3.0,!=5.0.0,!=5.1.0)", "uvicorn[standard] (>=0.12.0)"] -standard = ["email-validator (>=2.0.0)", "fastapi-cli[standard] (>=0.0.5)", "httpx (>=0.23.0)", "jinja2 (>=3.1.5)", "python-multipart (>=0.0.18)", "uvicorn[standard] (>=0.12.0)"] +all = ["email-validator (>=2.0.0)", "fastapi-cli[standard] (>=0.0.8)", "httpx (>=0.23.0,<1.0.0)", "itsdangerous (>=1.1.0)", "jinja2 (>=3.1.5)", "orjson (>=3.2.1)", "pydantic-extra-types (>=2.0.0)", "pydantic-settings (>=2.0.0)", "python-multipart (>=0.0.18)", "pyyaml (>=5.3.1)", "ujson (>=4.0.1,!=4.0.2,!=4.1.0,!=4.2.0,!=4.3.0,!=5.0.0,!=5.1.0)", "uvicorn[standard] (>=0.12.0)"] +standard = ["email-validator (>=2.0.0)", "fastapi-cli[standard] (>=0.0.8)", "httpx (>=0.23.0,<1.0.0)", "jinja2 (>=3.1.5)", "python-multipart (>=0.0.18)", "uvicorn[standard] (>=0.12.0)"] +standard-no-fastapi-cloud-cli = ["email-validator (>=2.0.0)", "fastapi-cli[standard-no-fastapi-cloud-cli] (>=0.0.8)", "httpx (>=0.23.0,<1.0.0)", "jinja2 (>=3.1.5)", "python-multipart (>=0.0.18)", "uvicorn[standard] (>=0.12.0)"] [[package]] name = "filelock" @@ -1330,6 +1416,7 @@ version = "3.19.1" description = "A platform independent file lock." optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "filelock-3.19.1-py3-none-any.whl", hash = "sha256:d38e30481def20772f5baf097c122c3babc4fcdb7e14e57049eb9d88c6dc017d"}, {file = "filelock-3.19.1.tar.gz", hash = "sha256:66eda1888b0171c998b35be2bcc0f6d75c388a7ce20c3f3f37aa8e96c2dddf58"}, @@ -1341,6 +1428,8 @@ version = "1.2.3" description = "Fluent data processing in Python - a chainable stream processing library for expressive data manipulation using method chaining" optional = true python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "flupy-1.2.3-py3-none-any.whl", hash = "sha256:be0f5a393bad2b3534697fbab17081993cd3f5817169dd3a61e8b2e0887612e6"}, {file = "flupy-1.2.3.tar.gz", hash = "sha256:220b6d40dea238cd2d66784c0d4d2a5483447a48acd343385768e0c740af9609"}, @@ -1355,6 +1444,7 @@ version = "1.3.1" description = "A lightweight Python library for handling FASTQ and FASTA files." optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "fqfa-1.3.1-py3-none-any.whl", hash = "sha256:9a043ad4cdfbd3466dc4660a525f7e68bff968686fc83f2461911229c483346b"}, {file = "fqfa-1.3.1.tar.gz", hash = "sha256:4624d4595cbefa0c3c0308c307bb123d621837e53768370ba48db5c20dc03cc9"}, @@ -1369,6 +1459,8 @@ version = "2025.7.0" description = "File-system specification" optional = true python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "fsspec-2025.7.0-py3-none-any.whl", hash = "sha256:8b012e39f63c7d5f10474de957f3ab793b47b45ae7d39f2fb735f8bbe25c0e21"}, {file = "fsspec-2025.7.0.tar.gz", hash = "sha256:786120687ffa54b8283d942929540d8bc5ccfa820deb555a2b5d0ed2b737bf58"}, @@ -1399,7 +1491,7 @@ smb = ["smbprotocol"] ssh = ["paramiko"] test = ["aiohttp (!=4.0.0a0,!=4.0.0a1)", "numpy", "pytest", "pytest-asyncio (!=0.22.0)", "pytest-benchmark", "pytest-cov", "pytest-mock", "pytest-recording", "pytest-rerunfailures", "requests"] test-downstream = ["aiobotocore (>=2.5.4,<3.0.0)", "dask[dataframe,test]", "moto[server] (>4,<5)", "pytest-timeout", "xarray"] -test-full = ["adlfs", "aiohttp (!=4.0.0a0,!=4.0.0a1)", "cloudpickle", "dask", "distributed", "dropbox", "dropboxdrivefs", "fastparquet", "fusepy", "gcsfs", "jinja2", "kerchunk", "libarchive-c", "lz4", "notebook", "numpy", "ocifs", "pandas", "panel", "paramiko", "pyarrow", "pyarrow (>=1)", "pyftpdlib", "pygit2", "pytest", "pytest-asyncio (!=0.22.0)", 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autocompletion tool for Python that can be used for text editors." optional = true python-versions = ">=3.6" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "jedi-0.19.2-py2.py3-none-any.whl", hash = "sha256:a8ef22bde8490f57fe5c7681a3c83cb58874daf72b4784de3cce5b6ef6edb5b9"}, {file = "jedi-0.19.2.tar.gz", hash = "sha256:4770dc3de41bde3966b02eb84fbcf557fb33cce26ad23da12c742fb50ecb11f0"}, @@ -1996,6 +2136,8 @@ version = "1.0.1" description = "JSON Matching Expressions" optional = true python-versions = ">=3.7" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "jmespath-1.0.1-py3-none-any.whl", hash = "sha256:02e2e4cc71b5bcab88332eebf907519190dd9e6e82107fa7f83b1003a6252980"}, {file = "jmespath-1.0.1.tar.gz", hash = "sha256:90261b206d6defd58fdd5e85f478bf633a2901798906be2ad389150c5c60edbe"}, @@ -2007,6 +2149,7 @@ version = "4.25.1" description = "An implementation of JSON Schema validation for Python" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "jsonschema-4.25.1-py3-none-any.whl", hash = "sha256:3fba0169e345c7175110351d456342c364814cfcf3b964ba4587f22915230a63"}, {file = "jsonschema-4.25.1.tar.gz", hash = "sha256:e4a9655ce0da0c0b67a085847e00a3a51449e1157f4f75e9fb5aa545e122eb85"}, @@ -2028,6 +2171,7 @@ version = "2025.4.1" description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "jsonschema_specifications-2025.4.1-py3-none-any.whl", hash = "sha256:4653bffbd6584f7de83a67e0d620ef16900b390ddc7939d56684d6c81e33f1af"}, {file = "jsonschema_specifications-2025.4.1.tar.gz", hash = "sha256:630159c9f4dbea161a6a2205c3011cc4f18ff381b189fff48bb39b9bf26ae608"}, @@ -2042,6 +2186,8 @@ version = "1.6" description = "Lazy attributes for Python objects" optional = true python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "lazy-1.6-py2.py3-none-any.whl", hash = "sha256:449375c125c7acac6b7a93f71b8e7ccb06546c37b161613f92d2d3981f793244"}, {file = "lazy-1.6.tar.gz", hash = "sha256:7127324ec709e8324f08cb4611c1abe01776bda53bb9ce68dc5dfa46ca0ed3e9"}, @@ -2057,6 +2203,7 @@ version = "6.0.0" description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API." optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "lxml-6.0.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:35bc626eec405f745199200ccb5c6b36f202675d204aa29bb52e27ba2b71dea8"}, {file = "lxml-6.0.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:246b40f8a4aec341cbbf52617cad8ab7c888d944bfe12a6abd2b1f6cfb6f6082"}, @@ -2166,6 +2313,8 @@ version = "1.3.10" description = "A super-fast templating language that borrows the best ideas from the existing templating languages." optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "mako-1.3.10-py3-none-any.whl", hash = "sha256:baef24a52fc4fc514a0887ac600f9f1cff3d82c61d4d700a1fa84d597b88db59"}, {file = "mako-1.3.10.tar.gz", hash = "sha256:99579a6f39583fa7e5630a28c3c1f440e4e97a414b80372649c0ce338da2ea28"}, @@ -2185,6 +2334,8 @@ version = "3.0.2" description = "Safely add untrusted strings to HTML/XML markup." optional = true python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "MarkupSafe-3.0.2-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:7e94c425039cde14257288fd61dcfb01963e658efbc0ff54f5306b06054700f8"}, {file = "MarkupSafe-3.0.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:9e2d922824181480953426608b81967de705c3cef4d1af983af849d7bd619158"}, @@ -2255,6 +2406,8 @@ version = "0.1.7" description = "Inline Matplotlib backend for Jupyter" optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "matplotlib_inline-0.1.7-py3-none-any.whl", hash = "sha256:df192d39a4ff8f21b1895d72e6a13f5fcc5099f00fa84384e0ea28c2cc0653ca"}, {file = "matplotlib_inline-0.1.7.tar.gz", hash = "sha256:8423b23ec666be3d16e16b60bdd8ac4e86e840ebd1dd11a30b9f117f2fa0ab90"}, @@ -2269,6 +2422,7 @@ version = "0.7.0" description = "Regular expression-based validation of HGVS-style variant strings for Multiplexed Assays of Variant Effect." optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "mavehgvs-0.7.0-py3-none-any.whl", hash = "sha256:a89d2ee16cf18a6a6ecfc2b6f5e280c3c699ddfe106b4389540fb0423f98e922"}, {file = "mavehgvs-0.7.0.tar.gz", hash = "sha256:09cc3311b6ccf53a3ce3e474611af9e28b87fa02b8e690343f99a85534f25eae"}, @@ -2286,6 +2440,7 @@ version = "2.6.1" description = "Process executor (not only) for tests." optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "mirakuru-2.6.1-py3-none-any.whl", hash = "sha256:4be0bfd270744454fa0c0466b8127b66bd55f4decaf05bbee9b071f2acbd9473"}, {file = "mirakuru-2.6.1.tar.gz", hash = "sha256:95d4f5a5ad406a625e9ca418f20f8e09386a35dad1ea30fd9073e0ae93f712c7"}, @@ -2300,6 +2455,7 @@ version = "1.10.1" description = "Optional static typing for Python" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "mypy-1.10.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:e36f229acfe250dc660790840916eb49726c928e8ce10fbdf90715090fe4ae02"}, {file = "mypy-1.10.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:51a46974340baaa4145363b9e051812a2446cf583dfaeba124af966fa44593f7"}, @@ -2346,6 +2502,7 @@ version = "1.1.0" description = "Type system extensions for programs checked with the mypy type checker." optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "mypy_extensions-1.1.0-py3-none-any.whl", hash = "sha256:1be4cccdb0f2482337c4743e60421de3a356cd97508abadd57d47403e94f5505"}, {file = "mypy_extensions-1.1.0.tar.gz", hash = "sha256:52e68efc3284861e772bbcd66823fde5ae21fd2fdb51c62a211403730b916558"}, @@ -2357,6 +2514,7 @@ version = "1.9.1" description = "Node.js virtual environment builder" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" +groups = ["dev"] files = [ {file = "nodeenv-1.9.1-py2.py3-none-any.whl", hash = "sha256:ba11c9782d29c27c70ffbdda2d7415098754709be8a7056d79a737cd901155c9"}, {file = "nodeenv-1.9.1.tar.gz", hash = "sha256:6ec12890a2dab7946721edbfbcd91f3319c6ccc9aec47be7c7e6b7011ee6645f"}, @@ -2368,6 +2526,7 @@ version = "1.26.4" description = "Fundamental package for array computing in Python" optional = false python-versions = ">=3.9" +groups = ["main", "dev"] files = [ {file = "numpy-1.26.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:9ff0f4f29c51e2803569d7a51c2304de5554655a60c5d776e35b4a41413830d0"}, {file = "numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:2e4ee3380d6de9c9ec04745830fd9e2eccb3e6cf790d39d7b98ffd19b0dd754a"}, @@ -2413,6 +2572,8 @@ version = "1.0.3" description = "A python wrapper over the ORCID API" optional = true python-versions = "*" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "orcid-1.0.3.tar.gz", hash = "sha256:5fe28b6d92aed5abe7145c959e4fa2afb90260be215ff3f36ad31c94ee41d0db"}, ] @@ -2430,6 +2591,7 @@ version = "25.0" description = "Core utilities for Python packages" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "packaging-25.0-py3-none-any.whl", hash = "sha256:29572ef2b1f17581046b3a2227d5c611fb25ec70ca1ba8554b24b0e69331a484"}, {file = "packaging-25.0.tar.gz", hash = "sha256:d443872c98d677bf60f6a1f2f8c1cb748e8fe762d2bf9d3148b5599295b0fc4f"}, @@ -2441,6 +2603,7 @@ version = "1.4.4" description = "Powerful data structures for data analysis, time series, and statistics" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "pandas-1.4.4-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:799e6a25932df7e6b1f8dabf63de064e2205dc309abb75956126a0453fd88e97"}, {file = "pandas-1.4.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:7cd1d69a387f7d5e1a5a06a87574d9ef2433847c0e78113ab51c84d3a8bcaeaa"}, @@ -2479,6 +2642,7 @@ version = "2.1.4.231227" description = "Type annotations for pandas" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "pandas_stubs-2.1.4.231227-py3-none-any.whl", hash = "sha256:211fc23e6ae87073bdf41dbf362c4a4d85e1e3477cb078dbac3da6c7fdaefba8"}, {file = "pandas_stubs-2.1.4.231227.tar.gz", hash = "sha256:3ea29ef001e9e44985f5ebde02d4413f94891ef6ec7e5056fb07d125be796c23"}, @@ -2494,6 +2658,8 @@ version = "1.20.2" description = "parse() is the opposite of format()" optional = true python-versions = "*" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "parse-1.20.2-py2.py3-none-any.whl", hash = "sha256:967095588cb802add9177d0c0b6133b5ba33b1ea9007ca800e526f42a85af558"}, {file = "parse-1.20.2.tar.gz", hash = "sha256:b41d604d16503c79d81af5165155c0b20f6c8d6c559efa66b4b695c3e5a0a0ce"}, @@ -2505,6 +2671,8 @@ version = "1.3" description = "Parsing and pattern matching made easy." optional = true python-versions = "*" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "Parsley-1.3-py2.py3-none-any.whl", hash = "sha256:c3bc417b8c7e3a96c87c0f2f751bfd784ed5156ffccebe2f84330df5685f8dc3"}, {file = "Parsley-1.3.tar.gz", hash = "sha256:9444278d47161d5f2be76a767809a3cbe6db4db822f46a4fd7481d4057208d41"}, @@ -2516,6 +2684,8 @@ version = "0.8.4" description = "A Python Parser" optional = true python-versions = ">=3.6" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "parso-0.8.4-py2.py3-none-any.whl", hash = "sha256:a418670a20291dacd2dddc80c377c5c3791378ee1e8d12bffc35420643d43f18"}, {file = "parso-0.8.4.tar.gz", hash = "sha256:eb3a7b58240fb99099a345571deecc0f9540ea5f4dd2fe14c2a99d6b281ab92d"}, @@ -2531,6 +2701,8 @@ version = "4.9.0" description = "Pexpect allows easy control of interactive console applications." optional = true python-versions = "*" +groups = ["main"] +markers = "extra == \"server\" and sys_platform != \"win32\" and sys_platform != \"emscripten\"" files = [ {file = "pexpect-4.9.0-py2.py3-none-any.whl", hash = "sha256:7236d1e080e4936be2dc3e326cec0af72acf9212a7e1d060210e70a47e253523"}, {file = "pexpect-4.9.0.tar.gz", hash = "sha256:ee7d41123f3c9911050ea2c2dac107568dc43b2d3b0c7557a33212c398ead30f"}, @@ -2545,6 +2717,7 @@ version = "4.3.8" description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`." optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "platformdirs-4.3.8-py3-none-any.whl", hash = "sha256:ff7059bb7eb1179e2685604f4aaf157cfd9535242bd23742eadc3c13542139b4"}, {file = "platformdirs-4.3.8.tar.gz", hash = "sha256:3d512d96e16bcb959a814c9f348431070822a6496326a4be0911c40b5a74c2bc"}, @@ -2561,6 +2734,7 @@ version = "1.6.0" description = "plugin and hook calling mechanisms for python" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "pluggy-1.6.0-py3-none-any.whl", hash = "sha256:e920276dd6813095e9377c0bc5566d94c932c33b27a3e3945d8389c374dd4746"}, {file = "pluggy-1.6.0.tar.gz", hash = "sha256:7dcc130b76258d33b90f61b658791dede3486c3e6bfb003ee5c9bfb396dd22f3"}, @@ -2576,6 +2750,7 @@ version = "0.7.4" description = "Utility that helps with local TCP ports management. It can find an unused TCP localhost port and remember the association." optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "port_for-0.7.4-py3-none-any.whl", hash = "sha256:08404aa072651a53dcefe8d7a598ee8a1dca320d9ac44ac464da16ccf2a02c4a"}, {file = "port_for-0.7.4.tar.gz", hash = "sha256:fc7713e7b22f89442f335ce12536653656e8f35146739eccaeff43d28436028d"}, @@ -2587,6 +2762,7 @@ version = "4.3.0" description = "A framework for managing and maintaining multi-language pre-commit hooks." optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "pre_commit-4.3.0-py2.py3-none-any.whl", hash = "sha256:2b0747ad7e6e967169136edffee14c16e148a778a54e4f967921aa1ebf2308d8"}, {file = "pre_commit-4.3.0.tar.gz", hash = "sha256:499fe450cc9d42e9d58e606262795ecb64dd05438943c62b66f6a8673da30b16"}, @@ -2605,6 +2781,8 @@ version = "3.0.51" description = "Library for building powerful interactive command lines in Python" optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "prompt_toolkit-3.0.51-py3-none-any.whl", hash = "sha256:52742911fde84e2d423e2f9a4cf1de7d7ac4e51958f648d9540e0fb8db077b07"}, {file = "prompt_toolkit-3.0.51.tar.gz", hash = "sha256:931a162e3b27fc90c86f1b48bb1fb2c528c2761475e57c9c06de13311c7b54ed"}, @@ -2619,6 +2797,8 @@ version = "7.0.0" description = "Cross-platform lib for process and system monitoring in Python. NOTE: the syntax of this script MUST be kept compatible with Python 2.7." optional = false python-versions = ">=3.6" +groups = ["dev"] +markers = "sys_platform != \"cygwin\"" files = [ {file = "psutil-7.0.0-cp36-abi3-macosx_10_9_x86_64.whl", hash = "sha256:101d71dc322e3cffd7cea0650b09b3d08b8e7c4109dd6809fe452dfd00e58b25"}, {file = "psutil-7.0.0-cp36-abi3-macosx_11_0_arm64.whl", hash = "sha256:39db632f6bb862eeccf56660871433e111b6ea58f2caea825571951d4b6aa3da"}, @@ -2642,6 +2822,7 @@ version = "3.2.9" description = "PostgreSQL database adapter for Python" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "psycopg-3.2.9-py3-none-any.whl", hash = "sha256:01a8dadccdaac2123c916208c96e06631641c0566b22005493f09663c7a8d3b6"}, {file = "psycopg-3.2.9.tar.gz", hash = "sha256:2fbb46fcd17bc81f993f28c47f1ebea38d66ae97cc2dbc3cad73b37cefbff700"}, @@ -2652,8 +2833,8 @@ typing-extensions = {version = ">=4.6", markers = "python_version < \"3.13\""} tzdata = {version = "*", markers = "sys_platform == \"win32\""} [package.extras] -binary = ["psycopg-binary (==3.2.9)"] -c = ["psycopg-c (==3.2.9)"] +binary = ["psycopg-binary (==3.2.9) ; implementation_name != \"pypy\""] +c = ["psycopg-c (==3.2.9) ; implementation_name != \"pypy\""] dev = ["ast-comments (>=1.1.2)", "black (>=24.1.0)", "codespell (>=2.2)", "dnspython (>=2.1)", "flake8 (>=4.0)", "isort-psycopg", "isort[colors] (>=6.0)", "mypy (>=1.14)", "pre-commit (>=4.0.1)", "types-setuptools (>=57.4)", "types-shapely (>=2.0)", "wheel (>=0.37)"] docs = ["Sphinx (>=5.0)", "furo (==2022.6.21)", "sphinx-autobuild (>=2021.3.14)", "sphinx-autodoc-typehints (>=1.12)"] pool = ["psycopg-pool"] @@ -2665,6 +2846,8 @@ version = "2.9.10" description = "psycopg2 - Python-PostgreSQL Database Adapter" optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "psycopg2-2.9.10-cp310-cp310-win32.whl", hash = "sha256:5df2b672140f95adb453af93a7d669d7a7bf0a56bcd26f1502329166f4a61716"}, {file = "psycopg2-2.9.10-cp310-cp310-win_amd64.whl", hash = "sha256:c6f7b8561225f9e711a9c47087388a97fdc948211c10a4bccbf0ba68ab7b3b5a"}, @@ -2672,6 +2855,7 @@ files = [ {file = "psycopg2-2.9.10-cp311-cp311-win_amd64.whl", hash = "sha256:0435034157049f6846e95103bd8f5a668788dd913a7c30162ca9503fdf542cb4"}, {file = "psycopg2-2.9.10-cp312-cp312-win32.whl", hash = "sha256:65a63d7ab0e067e2cdb3cf266de39663203d38d6a8ed97f5ca0cb315c73fe067"}, {file = "psycopg2-2.9.10-cp312-cp312-win_amd64.whl", hash = "sha256:4a579d6243da40a7b3182e0430493dbd55950c493d8c68f4eec0b302f6bbf20e"}, + {file = "psycopg2-2.9.10-cp313-cp313-win_amd64.whl", hash = "sha256:91fd603a2155da8d0cfcdbf8ab24a2d54bca72795b90d2a3ed2b6da8d979dee2"}, {file = "psycopg2-2.9.10-cp39-cp39-win32.whl", hash = "sha256:9d5b3b94b79a844a986d029eee38998232451119ad653aea42bb9220a8c5066b"}, {file = "psycopg2-2.9.10-cp39-cp39-win_amd64.whl", hash = "sha256:88138c8dedcbfa96408023ea2b0c369eda40fe5d75002c0964c78f46f11fa442"}, {file = "psycopg2-2.9.10.tar.gz", hash = "sha256:12ec0b40b0273f95296233e8750441339298e6a572f7039da5b260e3c8b60e11"}, @@ -2683,6 +2867,8 @@ version = "0.7.0" description = "Run a subprocess in a pseudo terminal" optional = true python-versions = "*" +groups = ["main"] +markers = "extra == \"server\" and sys_platform != \"win32\" and sys_platform != \"emscripten\"" files = [ {file = "ptyprocess-0.7.0-py2.py3-none-any.whl", hash = "sha256:4b41f3967fce3af57cc7e94b888626c18bf37a083e3651ca8feeb66d492fef35"}, {file = "ptyprocess-0.7.0.tar.gz", hash = "sha256:5c5d0a3b48ceee0b48485e0c26037c0acd7d29765ca3fbb5cb3831d347423220"}, @@ -2694,6 +2880,8 @@ version = "0.2.3" description = "Safely evaluate AST nodes without side effects" optional = true python-versions = "*" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "pure_eval-0.2.3-py3-none-any.whl", hash = "sha256:1db8e35b67b3d218d818ae653e27f06c3aa420901fa7b081ca98cbedc874e0d0"}, {file = "pure_eval-0.2.3.tar.gz", hash = "sha256:5f4e983f40564c576c7c8635ae88db5956bb2229d7e9237d03b3c0b0190eaf42"}, @@ -2704,13 +2892,15 @@ tests = ["pytest"] [[package]] name = "pyasn1" -version = "0.4.8" -description = "ASN.1 types and codecs" +version = "0.6.1" +description = "Pure-Python implementation of ASN.1 types and DER/BER/CER codecs (X.208)" optional = true -python-versions = "*" +python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ - {file = "pyasn1-0.4.8-py2.py3-none-any.whl", hash = "sha256:39c7e2ec30515947ff4e87fb6f456dfc6e84857d34be479c9d4a4ba4bf46aa5d"}, - {file = "pyasn1-0.4.8.tar.gz", hash = "sha256:aef77c9fb94a3ac588e87841208bdec464471d9871bd5050a287cc9a475cd0ba"}, + {file = "pyasn1-0.6.1-py3-none-any.whl", hash = "sha256:0d632f46f2ba09143da3a8afe9e33fb6f92fa2320ab7e886e2d0f7672af84629"}, + {file = "pyasn1-0.6.1.tar.gz", hash = "sha256:6f580d2bdd84365380830acf45550f2511469f673cb4a5ae3857a3170128b034"}, ] [[package]] @@ -2719,6 +2909,8 @@ version = "3.14.1" description = "Python DB API 2.0 (PEP 249) client for Amazon Athena" optional = true python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "pyathena-3.14.1-py3-none-any.whl", hash = "sha256:cdba338da81cc982d9babdbf801631655a5fd4ce9bf4e44a257efa431d891b36"}, {file = "pyathena-3.14.1.tar.gz", hash = "sha256:ff628261595b52bc2b74809c42ef89886f74be01371506e289fdb0bc4f653993"}, @@ -2743,6 +2935,8 @@ version = "2.22" description = "C parser in Python" optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\" and platform_python_implementation != \"PyPy\"" files = [ {file = "pycparser-2.22-py3-none-any.whl", hash = "sha256:c3702b6d3dd8c7abc1afa565d7e63d53a1d0bd86cdc24edd75470f4de499cfcc"}, {file = "pycparser-2.22.tar.gz", hash = "sha256:491c8be9c040f5390f5bf44a5b07752bd07f56edf992381b05c701439eec10f6"}, @@ -2754,6 +2948,7 @@ version = "2.10.6" description = "Data validation using Python type hints" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "pydantic-2.10.6-py3-none-any.whl", hash = "sha256:427d664bf0b8a2b34ff5dd0f5a18df00591adcee7198fbd71981054cef37b584"}, {file = "pydantic-2.10.6.tar.gz", hash = "sha256:ca5daa827cce33de7a42be142548b0096bf05a7e7b365aebfa5f8eeec7128236"}, @@ -2766,7 +2961,7 @@ typing-extensions = ">=4.12.2" [package.extras] email = ["email-validator (>=2.0.0)"] -timezone = ["tzdata"] +timezone = ["tzdata ; python_version >= \"3.9\" and platform_system == \"Windows\""] [[package]] name = "pydantic-core" @@ -2774,6 +2969,7 @@ version = "2.27.2" description = "Core functionality for Pydantic validation and serialization" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "pydantic_core-2.27.2-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:2d367ca20b2f14095a8f4fa1210f5a7b78b8a20009ecced6b12818f455b1e9fa"}, {file = "pydantic_core-2.27.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:491a2b73db93fab69731eaee494f320faa4e093dbed776be1a829c2eb222c34c"}, @@ -2886,6 +3082,8 @@ version = "13.0.0" description = "A rough port of Node.js's EventEmitter to Python with a few tricks of its own" optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "pyee-13.0.0-py3-none-any.whl", hash = "sha256:48195a3cddb3b1515ce0695ed76036b5ccc2ef3a9f963ff9f77aec0139845498"}, {file = "pyee-13.0.0.tar.gz", hash = "sha256:b391e3c5a434d1f5118a25615001dbc8f669cf410ab67d04c4d4e07c55481c37"}, @@ -2895,7 +3093,7 @@ files = [ typing-extensions = "*" [package.extras] -dev = ["black", "build", "flake8", "flake8-black", "isort", "jupyter-console", "mkdocs", "mkdocs-include-markdown-plugin", "mkdocstrings[python]", "mypy", "pytest", "pytest-asyncio", "pytest-trio", "sphinx", "toml", "tox", "trio", "trio", "trio-typing", "twine", "twisted", "validate-pyproject[all]"] +dev = ["black", "build", "flake8", "flake8-black", "isort", "jupyter-console", "mkdocs", "mkdocs-include-markdown-plugin", "mkdocstrings[python]", "mypy", "pytest", "pytest-asyncio ; python_version >= \"3.4\"", "pytest-trio ; python_version >= \"3.7\"", "sphinx", "toml", "tox", "trio", "trio ; python_version > \"3.6\"", "trio-typing ; python_version > \"3.6\"", "twine", "twisted", "validate-pyproject[all]"] [[package]] name = "pygments" @@ -2903,6 +3101,8 @@ version = "2.19.2" description = "Pygments is a syntax highlighting package written in Python." optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "pygments-2.19.2-py3-none-any.whl", hash = "sha256:86540386c03d588bb81d44bc3928634ff26449851e99741617ecb9037ee5ec0b"}, {file = "pygments-2.19.2.tar.gz", hash = "sha256:636cb2477cec7f8952536970bc533bc43743542f70392ae026374600add5b887"}, @@ -2917,6 +3117,7 @@ version = "3.8.0" description = "🐫 Convert strings (and dictionary keys) between snake case, camel case and pascal case in Python. Inspired by Humps for Node" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "pyhumps-3.8.0-py3-none-any.whl", hash = "sha256:060e1954d9069f428232a1adda165db0b9d8dfdce1d265d36df7fbff540acfd6"}, {file = "pyhumps-3.8.0.tar.gz", hash = "sha256:498026258f7ee1a8e447c2e28526c0bea9407f9a59c03260aee4bd6c04d681a3"}, @@ -2928,6 +3129,8 @@ version = "0.0.25" description = "Headless chrome/chromium automation library (unofficial port of puppeteer)" optional = true python-versions = ">=3.5" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "pyppeteer-0.0.25.tar.gz", hash = "sha256:51fe769b722a1718043b74d12c20420f29e0dd9eeea2b66652b7f93a9ad465dd"}, ] @@ -2945,6 +3148,8 @@ version = "2.0.1" description = "A jquery-like library for python" optional = true python-versions = "*" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "pyquery-2.0.1-py3-none-any.whl", hash = "sha256:aedfa0bd0eb9afc94b3ddbec8f375a6362b32bc9662f46e3e0d866483f4771b0"}, {file = "pyquery-2.0.1.tar.gz", hash = "sha256:0194bb2706b12d037db12c51928fe9ebb36b72d9e719565daba5a6c595322faf"}, @@ -2963,6 +3168,8 @@ version = "3.5.4" description = "A python implementation of GNU readline." optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "sys_platform == \"win32\" and extra == \"server\"" files = [ {file = "pyreadline3-3.5.4-py3-none-any.whl", hash = "sha256:eaf8e6cc3c49bcccf145fc6067ba8643d1df34d604a1ec0eccbf7a18e6d3fae6"}, {file = "pyreadline3-3.5.4.tar.gz", hash = "sha256:8d57d53039a1c75adba8e50dd3d992b28143480816187ea5efbd5c78e6c885b7"}, @@ -2977,6 +3184,8 @@ version = "0.23.3" description = "Package for reading, manipulating, and writing genomic data" optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "pysam-0.23.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:a0b99d875f293fad0bd9c9c923e8910c03af62d291ebb7d20e69ceaf39e383d4"}, {file = "pysam-0.23.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:725a32970cf4ce322f4ab2a52b755163297027a0349f0d151537fe16bdf525e5"}, @@ -3023,6 +3232,7 @@ version = "7.2.2" description = "pytest: simple powerful testing with Python" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "pytest-7.2.2-py3-none-any.whl", hash = "sha256:130328f552dcfac0b1cec75c12e3f005619dc5f874f0a06e8ff7263f0ee6225e"}, {file = "pytest-7.2.2.tar.gz", hash = "sha256:c99ab0c73aceb050f68929bc93af19ab6db0558791c6a0715723abe9d0ade9d4"}, @@ -3044,6 +3254,7 @@ version = "0.23.8" description = "Pytest support for asyncio" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "pytest_asyncio-0.23.8-py3-none-any.whl", hash = "sha256:50265d892689a5faefb84df80819d1ecef566eb3549cf915dfb33569359d1ce2"}, {file = "pytest_asyncio-0.23.8.tar.gz", hash = "sha256:759b10b33a6dc61cce40a8bd5205e302978bbbcc00e279a8b61d9a6a3c82e4d3"}, @@ -3062,6 +3273,7 @@ version = "5.0.0" description = "Pytest plugin for measuring coverage." optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "pytest-cov-5.0.0.tar.gz", hash = "sha256:5837b58e9f6ebd335b0f8060eecce69b662415b16dc503883a02f45dfeb14857"}, {file = "pytest_cov-5.0.0-py3-none-any.whl", hash = "sha256:4f0764a1219df53214206bf1feea4633c3b558a2925c8b59f144f682861ce652"}, @@ -3080,6 +3292,7 @@ version = "5.0.0" description = "Postgresql fixtures and fixture factories for Pytest." optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "pytest-postgresql-5.0.0.tar.gz", hash = "sha256:22edcbafab8995ee85b8d948ddfaad4f70c2c7462303d7477ecd2f77fc9d15bd"}, {file = "pytest_postgresql-5.0.0-py3-none-any.whl", hash = "sha256:6e8f0773b57c9b8975b6392c241b7b81b7018f32079a533f368f2fbda732ecd3"}, @@ -3098,6 +3311,7 @@ version = "0.6.0" description = "Pytest Plugin to disable socket calls during tests" optional = false python-versions = ">=3.7,<4.0" +groups = ["dev"] files = [ {file = "pytest_socket-0.6.0-py3-none-any.whl", hash = "sha256:cca72f134ff01e0023c402e78d31b32e68da3efdf3493bf7788f8eba86a6824c"}, {file = "pytest_socket-0.6.0.tar.gz", hash = "sha256:363c1d67228315d4fc7912f1aabfd570de29d0e3db6217d61db5728adacd7138"}, @@ -3112,6 +3326,7 @@ version = "2.9.0.post0" description = "Extensions to the standard Python datetime module" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" +groups = ["main"] files = [ {file = "python-dateutil-2.9.0.post0.tar.gz", hash = "sha256:37dd54208da7e1cd875388217d5e00ebd4179249f90fb72437e91a35459a0ad3"}, {file = "python_dateutil-2.9.0.post0-py2.py3-none-any.whl", hash = "sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427"}, @@ -3126,6 +3341,7 @@ version = "0.20.0" description = "Read key-value pairs from a .env file and set them as environment variables" optional = false python-versions = ">=3.5" +groups = ["main"] files = [ {file = "python-dotenv-0.20.0.tar.gz", hash = "sha256:b7e3b04a59693c42c36f9ab1cc2acc46fa5df8c78e178fc33a8d4cd05c8d498f"}, {file = "python_dotenv-0.20.0-py3-none-any.whl", hash = "sha256:d92a187be61fe482e4fd675b6d52200e7be63a12b724abbf931a40ce4fa92938"}, @@ -3136,19 +3352,21 @@ cli = ["click (>=5.0)"] [[package]] name = "python-jose" -version = "3.4.0" +version = "3.5.0" description = "JOSE implementation in Python" optional = true -python-versions = "*" +python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"server\"" files = [ - {file = "python-jose-3.4.0.tar.gz", hash = "sha256:9a9a40f418ced8ecaf7e3b28d69887ceaa76adad3bcaa6dae0d9e596fec1d680"}, - {file = "python_jose-3.4.0-py2.py3-none-any.whl", hash = "sha256:9c9f616819652d109bd889ecd1e15e9a162b9b94d682534c9c2146092945b78f"}, + {file = "python_jose-3.5.0-py2.py3-none-any.whl", hash = "sha256:abd1202f23d34dfad2c3d28cb8617b90acf34132c7afd60abd0b0b7d3cb55771"}, + {file 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{file = "python_multipart-0.0.20-py3-none-any.whl", hash = "sha256:8a62d3a8335e06589fe01f2a3e178cdcc632f3fbe0d492ad9ee0ec35aab1f104"}, {file = "python_multipart-0.0.20.tar.gz", hash = "sha256:8dd0cab45b8e23064ae09147625994d090fa46f5b0d1e13af944c331a7fa9d13"}, @@ -3185,6 +3406,7 @@ version = "2025.2" description = "World timezone definitions, modern and historical" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "pytz-2025.2-py2.py3-none-any.whl", hash = "sha256:5ddf76296dd8c44c26eb8f4b6f35488f3ccbf6fbbd7adee0b7262d43f0ec2f00"}, {file = "pytz-2025.2.tar.gz", hash = "sha256:360b9e3dbb49a209c21ad61809c7fb453643e048b38924c765813546746e81c3"}, @@ -3196,6 +3418,7 @@ version = "6.0.2" description = "YAML parser and emitter for Python" optional = false python-versions = ">=3.8" +groups = ["main", "dev"] files = [ {file = "PyYAML-6.0.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:0a9a2848a5b7feac301353437eb7d5957887edbf81d56e903999a75a3d743086"}, {file = 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python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "types_s3transfer-0.13.0-py3-none-any.whl", hash = "sha256:79c8375cbf48a64bff7654c02df1ec4b20d74f8c5672fc13e382f593ca5565b3"}, {file = "types_s3transfer-0.13.0.tar.gz", hash = "sha256:203dadcb9865c2f68fb44bc0440e1dc05b79197ba4a641c0976c26c9af75ef52"}, @@ -4072,6 +4354,7 @@ version = "4.14.1" description = "Backported and Experimental Type Hints for Python 3.9+" optional = false python-versions = ">=3.9" +groups = ["main", "dev"] files = [ {file = "typing_extensions-4.14.1-py3-none-any.whl", hash = "sha256:d1e1e3b58374dc93031d6eda2420a48ea44a36c2b4766a4fdeb3710755731d76"}, {file = "typing_extensions-4.14.1.tar.gz", hash = "sha256:38b39f4aeeab64884ce9f74c94263ef78f3c22467c8724005483154c26648d36"}, @@ -4083,6 +4366,8 @@ version = "2025.2" description = "Provider of IANA time zone data" optional = false python-versions = ">=2" +groups = ["dev"] +markers = "sys_platform == \"win32\"" files = [ {file = 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+markers = "sys_platform != \"win32\" and sys_platform != \"cygwin\" and platform_python_implementation != \"PyPy\" and extra == \"server\"" files = [ {file = "uvloop-0.21.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:ec7e6b09a6fdded42403182ab6b832b71f4edaf7f37a9a0e371a01db5f0cb45f"}, {file = "uvloop-0.21.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:196274f2adb9689a289ad7d65700d37df0c0930fd8e4e743fa4834e850d7719d"}, @@ -4187,6 +4477,7 @@ version = "20.34.0" description = "Virtual Python Environment builder" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "virtualenv-20.34.0-py3-none-any.whl", hash = "sha256:341f5afa7eee943e4984a9207c025feedd768baff6753cd660c857ceb3e36026"}, {file = "virtualenv-20.34.0.tar.gz", hash = "sha256:44815b2c9dee7ed86e387b842a84f20b93f7f417f95886ca1996a72a4138eb1a"}, @@ -4199,7 +4490,7 @@ platformdirs = ">=3.9.1,<5" [package.extras] docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2,!=7.3)", 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[[package]] name = "w3lib" @@ -4207,6 +4498,8 @@ version = "2.3.1" description = "Library of web-related functions" optional = true python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "w3lib-2.3.1-py3-none-any.whl", hash = "sha256:9ccd2ae10c8c41c7279cd8ad4fe65f834be894fe7bfdd7304b991fd69325847b"}, {file = "w3lib-2.3.1.tar.gz", hash = "sha256:5c8ac02a3027576174c2b61eb9a2170ba1b197cae767080771b6f1febda249a4"}, @@ -4218,6 +4511,8 @@ version = "1.1.0" description = "Simple, modern and high performance file watching and code reload in python." optional = true python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "watchfiles-1.1.0-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:27f30e14aa1c1e91cb653f03a63445739919aef84c8d2517997a83155e7a2fcc"}, {file = "watchfiles-1.1.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:3366f56c272232860ab45c77c3ca7b74ee819c8e1f6f35a7125556b198bbc6df"}, @@ -4336,6 +4631,8 @@ version = "3.2.0" description = "Python CloudWatch Logging" optional = true python-versions = ">=3.8" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "watchtower-3.2.0-py3-none-any.whl", hash = "sha256:3c41396e022dd48af2261737d3e78edaaa2d1c60ad59704fc7e2524ddfe50bfb"}, {file = "watchtower-3.2.0.tar.gz", hash = "sha256:7d515b2d0ae0d36168d3b32937e7f79c19b3efd25bbd16bcda233a092666b98c"}, @@ -4353,6 +4650,8 @@ version = "0.2.13" description = "Measures the displayed width of unicode strings in a terminal" optional = true python-versions = "*" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"}, {file = "wcwidth-0.2.13.tar.gz", hash = "sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"}, @@ -4364,6 +4663,8 @@ version = "0.5.1" description = "Character encoding aliases for legacy web content" optional = true python-versions = "*" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "webencodings-0.5.1-py2.py3-none-any.whl", hash = "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78"}, {file = "webencodings-0.5.1.tar.gz", hash = "sha256:b36a1c245f2d304965eb4e0a82848379241dc04b865afcc4aab16748587e1923"}, @@ -4375,6 +4676,8 @@ version = "15.0.1" description = "An implementation of the WebSocket Protocol (RFC 6455 & 7692)" optional = true python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "websockets-15.0.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:d63efaa0cd96cf0c5fe4d581521d9fa87744540d4bc999ae6e08595a1014b45b"}, {file = "websockets-15.0.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:ac60e3b188ec7574cb761b08d50fcedf9d77f1530352db4eef1707fe9dee7205"}, @@ -4453,6 +4756,8 @@ version = "9.0.0" description = "Database migrations with SQL" optional = true python-versions = "*" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "yoyo_migrations-9.0.0-py3-none-any.whl", hash = "sha256:fc65d3a6d9449c1c54d64ff2ff98e32a27da356057c60e3471010bfb19ede081"}, ] @@ -4473,13 +4778,15 @@ version = "3.23.0" description = "Backport of pathlib-compatible object wrapper for zip files" optional = true python-versions = ">=3.9" +groups = ["main"] +markers = "extra == \"server\"" files = [ {file = "zipp-3.23.0-py3-none-any.whl", hash = "sha256:071652d6115ed432f5ce1d34c336c0adfd6a884660d1e9712a256d3d3bd4b14e"}, {file = "zipp-3.23.0.tar.gz", hash = "sha256:a07157588a12518c9d4034df3fbbee09c814741a33ff63c05fa29d26a2404166"}, ] [package.extras] -check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"] +check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\""] cover = ["pytest-cov"] doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] enabler = ["pytest-enabler (>=2.2)"] @@ -4490,6 +4797,6 @@ type = ["pytest-mypy"] server = ["alembic", "alembic-utils", "arq", "authlib", "biocommons", "boto3", "cdot", "cryptography", "fastapi", "ga4gh-va-spec", "hgvs", "orcid", "psycopg2", "pyathena", "python-jose", "python-multipart", "requests", "slack-sdk", "starlette", "starlette-context", "uvicorn", "watchtower"] [metadata] -lock-version = "2.0" +lock-version = "2.1" python-versions = "^3.11" -content-hash = "794264ed002fe805860aeea999999924f6e79d6ba53c7e5270487b48b5e07f34" +content-hash = "cb94d5f7faedc07aa0e3457fdb0735b6526b2f40f02c6d438cab46b733123fd6" diff --git a/pyproject.toml b/pyproject.toml index 884094d3..61b68040 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -44,20 +44,20 @@ ga4gh-va-spec = "~0.4.2" alembic = { version = "~1.14.0", optional = true } alembic-utils = { version = "0.8.1", optional = true } arq = { version = "~0.25.0", optional = true } -authlib = { version = "~1.3.1", optional = true } +authlib = { version = "~1.6.5", optional = true } boto3 = { version = "~1.34.97", optional = true } biocommons = { version = "~0.0.0", optional = true } cryptography = { version = "~44.0.1", optional = true } cdot = { version = "~0.2.21", optional = true } -fastapi = { version = "~0.115.0", optional = true } +fastapi = { version = "~0.121.0", optional = true } hgvs = { version = "~1.5.4", optional = true } orcid = { version = "~1.0.3", optional = true } pyathena = { version = "~3.14.1", optional = true } psycopg2 = { version = "~2.9.3", optional = true } -python-jose = { extras = ["cryptography"], version = "~3.4.0", optional = true } +python-jose = { extras = ["cryptography"], version = "~3.5.0", optional = true } python-multipart = { version = "~0.0.5", optional = true } requests = { version = "~2.32.2", optional = true } -starlette = { version = "~0.41.0", optional = true } +starlette = { version = "~0.49.0", optional = true } starlette-context = { version = "^0.3.6", optional = true } slack-sdk = { version = "~3.21.3", optional = true } uvicorn = { extras = ["standard"], version = "*", optional = true }