-
Notifications
You must be signed in to change notification settings - Fork 2
Open
Labels
app: frontendTask implementation touches the frontendTask implementation touches the frontendsprint: carried overTask was carried over from a previous sprintTask was carried over from a previous sprinttype: featureNew featureNew feature
Description
As part of release-2025.4.1, we've added histogram code that infers the consequence of a variant from its HGVS string, classifies each type of variant consequence, and displays variant scores by consequence as a set of series' on the variant histogram. While this feature works about as well as it can from inferred consequences, we should transition to VEP based consequences on the heatmap as part of VariantEffect/mavedb-api#429.
We should:
- Use VEP based variant consequence as classifiers where available
- This likely means not displaying variant consequence distributions when we do not have VEP information, but we might choose to display inferred consequence
- Evaluate the series color scheme for variant consequences given the large set of possible colors
Metadata
Metadata
Assignees
Labels
app: frontendTask implementation touches the frontendTask implementation touches the frontendsprint: carried overTask was carried over from a previous sprintTask was carried over from a previous sprinttype: featureNew featureNew feature