Adding some basic info and an environment

Author: dbirman

.gitignore

@@ -67,3 +67,5 @@ crashlytics-build.properties
 Assets/AddressableAssets/*
 Assets/AddressableAssets.zip
 Assets/AddressableAssets.zip.meta
+
+Pipelines/brainatlas-venv/*

Pipelines/README.md

@@ -0,0 +1,11 @@
+# BrainGlobe Atlas -> BrainAtlas Unity Format
+
+Each atlas (e.g. CCF) in BrainGlobe has a shape (ap, dv, ml) and a resolution (25um), a list of brain regions with acronyms ("grey") and ID #s (8). The origin coordinate is always the "front, top, left" coordinate. Each brain region also has a mesh file attached to it. 
+
+## Create metadata files
+
+We need to define for each atlas a base CoordinateSpace metadata file and a CSV file that will contain the minimal region data and colors.
+
+## Download atlas annotation file
+
+We'll download the annotation file locally and save it in a format readable by Unity (raw bytes)

Pipelines/requirements.txt

@@ -0,0 +1,30 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "name": "python",
+   "version": "3.10.2"
+  },
+  "orig_nbformat": 4,
+  "vscode": {
+   "interpreter": {
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+   }
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}