Merge branch 'main' into copilot/remove-proxy-feature

Author: kjy5

.idea/copilot.data.migration.ask.xml

@@ -31,9 +31,9 @@ dependencies = [
     "packaging==25.0",
     "platformdirs==4.5.1",
     "pyserial==3.5",
-    "python-socketio[asyncio_client]==5.15.0",
+    "python-socketio[asyncio_client]==5.15.1",
     "requests==2.32.5",
-    "sensapex==1.400.4",
+    "sensapex==1.504.1",
     "rich==14.2.0",
     "vbl-aquarium==1.1.0"
 ]

.idea/copilot.data.migration.ask2agent.xml

@@ -142,7 +142,7 @@ async def set_depth(self, manipulator_id: str, depth: float, speed: float) -> fl
 
     @override
     async def stop(self, manipulator_id: str) -> None:
-        self._get_device(manipulator_id).stop()
+        self._get_device(manipulator_id).stop()  # pyright: ignore [reportUnknownMemberType]
 
     @override
     def platform_space_to_unified_space(self, platform_space: Vector4) -> Vector4:

.idea/ephys-link.iml

@@ -12,7 +12,7 @@
 from os import makedirs
 from os.path import exists, join
 from socket import gethostbyname, gethostname
-from sys import exit
+from sys import exit as sys_exit
 from tkinter import CENTER, RIGHT, BooleanVar, E, IntVar, StringVar, Tk, ttk
 from typing import final
 
@@ -71,7 +71,7 @@ def get_options(self) -> EphysLinkOptions:
 
         # Exit if the user did not submit options.
         if not self._submit:
-            exit(1)
+            sys_exit(1)
 
         # Extract options from GUI.
         options = EphysLinkOptions(

.idea/misc.xml

@@ -5,7 +5,9 @@
 from pkgutil import iter_modules
 
 from packaging.version import parse
-from requests import ConnectionError, ConnectTimeout, get
+from requests import ConnectionError as RequestsConnectionError
+from requests import ConnectTimeout as RequestsConnectTimeout
+from requests import get
 from vbl_aquarium.models.ephys_link import EphysLinkOptions
 
 from ephys_link.__about__ import __version__
@@ -45,7 +47,7 @@ def check_for_updates(console: Console) -> None:
         if parse(latest_version) > parse(__version__):
             console.critical_print(f"Update available: {latest_version} (current: {__version__})")
             console.critical_print("Download at: https://github.com/VirtualBrainLab/ephys-link/releases/latest")
-    except (ConnectionError, ConnectTimeout):
+    except (RequestsConnectionError, RequestsConnectTimeout):
         console.error_print("UPDATE", UNABLE_TO_CHECK_FOR_UPDATES_ERROR)
 
 

pyproject.toml

@@ -3,7 +3,8 @@
 
 import pytest
 from pytest_mock import MockerFixture
-from requests import ConnectionError, ConnectTimeout
+from requests import ConnectionError as RequestsConnectionError
+from requests import ConnectTimeout as RequestsConnectTimeout
 from vbl_aquarium.models.ephys_link import EphysLinkOptions
 
 from ephys_link.__about__ import __version__
@@ -76,9 +77,9 @@ def test_check_for_updates_is_older(self, console: Console, mocker: MockerFixtur
         # Assert: critical_print should be called since an update is available.
         spied_critical_print.assert_called()
 
-    @pytest.mark.parametrize("exception", [ConnectionError, ConnectTimeout])
+    @pytest.mark.parametrize("exception", [RequestsConnectionError, RequestsConnectTimeout])
     def test_check_for_updates_connection_errors(
-        self, exception: ConnectionError | ConnectTimeout, console: Console, mocker: MockerFixture
+        self, exception: RequestsConnectionError | RequestsConnectTimeout, console: Console, mocker: MockerFixture
     ) -> None:
         """Test the check_for_updates function with connection-related errors."""
         # Add mocks and spies.