Remove outdated sentence about New Scale Pathfinder MPM in ephys link tutorial (#126)

Copilot · kjy5 · web-flow · commit 177de8e701d6 · 2025-10-22T10:51:45.000-07:00
* Initial plan

* Initial plan: Remove unnecessary sentence from ephys link tutorial

Co-authored-by: kjy5 &lt;82800265+kjy5@users.noreply.github.com&gt;

* Remove unnecessary sentence about New Scale Pathfinder MPM in ephys link tutorial

Co-authored-by: kjy5 &lt;82800265+kjy5@users.noreply.github.com&gt;

---------

Co-authored-by: copilot-swe-agent[bot] &lt;198982749+Copilot@users.noreply.github.com&gt;
Co-authored-by: kjy5 &lt;82800265+kjy5@users.noreply.github.com&gt;
diff --git a/source/_autosummary/oursin.atlas.ontology.rst b/source/_autosummary/oursin.atlas.ontology.rst
@@ -19,6 +19,7 @@ oursin.atlas.ontology
       :nosignatures:
    
       Atlas
+      CustomAtlas
       Structure
    
    
diff --git a/source/_autosummary/oursin.atlas.rst b/source/_autosummary/oursin.atlas.rst
@@ -26,5 +26,5 @@
    :template: custom-module-template.rst
    :recursive:
 
-   oursin.atlas.ccf
+   ontology
 
diff --git a/source/_autosummary/oursin.camera.rst b/source/_autosummary/oursin.camera.rst
@@ -14,17 +14,25 @@
    .. autosummary::
       :nosignatures:
    
-      set_pan
-      set_position
-      set_rotation
-      set_target
-      set_target_area
-      set_zoom
+      clear
+      on_camera_img
+      on_camera_img_meta
+      set_brain_rotation
+      set_light_camera
+      set_light_rotation
+      setup
    
    
 
    
    
+   .. rubric:: Classes
+
+   .. autosummary::
+      :nosignatures:
+   
+      Camera
+   
    
 
    
diff --git a/source/_autosummary/oursin.client.rst b/source/_autosummary/oursin.client.rst
@@ -20,6 +20,12 @@
       connected
       disconnect
       message
+      receive_camera_img
+      receive_camera_img_meta
+      receive_dock_callback
+      receive_neuron_callback
+      receive_volume_click
+      urchin_loaded_callback
    
    
 
diff --git a/source/_autosummary/oursin.colors.rst b/source/_autosummary/oursin.colors.rst
@@ -1,4 +1,4 @@
-oursin.colors
+﻿oursin.colors
 =============
 
 .. automodule:: oursin.colors
@@ -26,6 +26,6 @@ oursin.colors
    :template: custom-module-template.rst
    :recursive:
 
-   oursin.colors.colors
-   oursin.colors.xkcd_rgb
+   colors
+   xkcd_rgb
 
diff --git a/source/_autosummary/oursin.lines.rst b/source/_autosummary/oursin.lines.rst
@@ -14,15 +14,21 @@
    .. autosummary::
       :nosignatures:
    
+      clear
       create
       delete
-      set_color
-      set_position
    
    
 
    
    
+   .. rubric:: Classes
+
+   .. autosummary::
+      :nosignatures:
+   
+      Line
+   
    
 
    
diff --git a/source/_autosummary/oursin.meshes.rst b/source/_autosummary/oursin.meshes.rst
@@ -14,6 +14,7 @@
    .. autosummary::
       :nosignatures:
    
+      clear
       create
       delete
       set_colors
diff --git a/source/_autosummary/oursin.particles.rst b/source/_autosummary/oursin.particles.rst
@@ -15,10 +15,6 @@
       :nosignatures:
    
       clear
-      create
-      set_colors
-      set_positions
-      set_sizes
    
    
 
@@ -29,7 +25,7 @@
    .. autosummary::
       :nosignatures:
    
-      Particle
+      ParticleSystem
    
    
 
diff --git a/source/_autosummary/oursin.probes.rst b/source/_autosummary/oursin.probes.rst
@@ -14,17 +14,25 @@
    .. autosummary::
       :nosignatures:
    
+      clear
       create
       delete
-      set_angle
-      set_color
-      set_position
-      set_size
+      set_angles
+      set_colors
+      set_positions
+      set_scales
    
    
 
    
    
+   .. rubric:: Classes
+
+   .. autosummary::
+      :nosignatures:
+   
+      Probe
+   
    
 
    
diff --git a/source/_autosummary/oursin.renderer.rst b/source/_autosummary/oursin.renderer.rst
@@ -15,11 +15,7 @@
       :nosignatures:
    
       clear
-      clear_areas
-      clear_neurons
-      clear_probes
-      clear_texts
-      clear_volumes
+      is_running_in_colab
       setup
    
    
diff --git a/source/_autosummary/oursin.text.rst b/source/_autosummary/oursin.text.rst
@@ -14,17 +14,24 @@
    .. autosummary::
       :nosignatures:
    
+      clear
       create
-      delete
-      set_color
-      set_position
-      set_size
-      set_text
+      set_colors
+      set_font_sizes
+      set_positions
+      set_texts
    
    
 
    
    
+   .. rubric:: Classes
+
+   .. autosummary::
+      :nosignatures:
+   
+      Text
+   
    
 
    
diff --git a/source/_autosummary/oursin.texture.rst b/source/_autosummary/oursin.texture.rst
@@ -0,0 +1,41 @@
+﻿oursin.texture
+==============
+
+.. automodule:: oursin.texture
+
+   
+   
+   
+
+   
+   
+   .. rubric:: Functions
+
+   .. autosummary::
+      :nosignatures:
+   
+      clear
+      create
+      delete
+      set_images
+      set_positions
+   
+   
+
+   
+   
+   .. rubric:: Classes
+
+   .. autosummary::
+      :nosignatures:
+   
+      Texture
+   
+   
+
+   
+   
+   
+
+
+
diff --git a/source/_autosummary/oursin.utils.rst b/source/_autosummary/oursin.utils.rst
@@ -0,0 +1,50 @@
+﻿oursin.utils
+============
+
+.. automodule:: oursin.utils
+
+   
+   
+   
+
+   
+   
+   .. rubric:: Functions
+
+   .. autosummary::
+      :nosignatures:
+   
+      formatted_color
+      formatted_vector2
+      formatted_vector3
+      hex_to_rgb
+      list_of_list2vector3
+      rgb_to_hex
+      rgba_to_hex
+      sanitize_color
+      sanitize_float
+      sanitize_list
+      sanitize_material
+      sanitize_side
+      sanitize_string
+      sanitize_vector3
+   
+   
+
+   
+   
+   .. rubric:: Classes
+
+   .. autosummary::
+      :nosignatures:
+   
+      Side
+   
+   
+
+   
+   
+   
+
+
+
diff --git a/source/_autosummary/oursin.volumes.rst b/source/_autosummary/oursin.volumes.rst
@@ -1,4 +1,4 @@
-oursin.volumes
+﻿oursin.volumes
 ==============
 
 .. automodule:: oursin.volumes
@@ -14,18 +14,23 @@ oursin.volumes
    .. autosummary::
       :nosignatures:
    
-      create
-      delete
-      set_colormap
-      set_data
-      set_slice_data
-      set_visibility
-      set_visibility_allen
+      clear
+      clear_clicks
+      colormap
+      compress_volume
+      save_clicks
    
    
 
    
    
+   .. rubric:: Classes
+
+   .. autosummary::
+      :nosignatures:
+   
+      Volume
+   
    
 
    
diff --git a/source/pinpoint/tutorials/tutorial_ephys_link.md b/source/pinpoint/tutorials/tutorial_ephys_link.md
@@ -109,9 +109,6 @@ stop button feature.
 
 ## 2. Mirror the Positions of _in vivo_ Probes in Pinpoint
 
-This step is not required for New Scale Pathfinder MPM connections. [See below
-for details](mpm-no-need-config).
-
 ![Spawn probes in the planner scene](../../_static/images/tutorial/ephys_link/ephys_link_spawn.png)
 
 1. Spawn the corresponding probes in the planner scene.
