Chore updated Ephys Link CLI usage

Author: kjy5

source/ephys_link/installation_and_use.md

@@ -76,7 +76,7 @@ window instead of `localhost`.
 4. In a terminal, navigate to the repository's root directory and run
 
    ```bash
-      hatch shell
+   hatch shell
    ```
 
 This will create a virtual environment, install Python 12 (if not found), and install the package in editable mode.
@@ -98,31 +98,38 @@ server.launch("sensapex", 8081)
 
 ## CLI Usage
 
-Ephys Link can be launched from the command line directly. This is useful for computers or servers without graphical
-user interfaces.
+Ephys Link can be launched from the command line directly without the configuration window. This is useful for computers
+or servers without graphical user interfaces.
+
+With the standalone executable downloaded, invoking the executable from the command line:
+
+```bash
+ephys_link-vX.X.X-Windows-x86_64.exe -b
+```
+
+Use the actual name of the executable you downloaded. The `-b` or `--background` flag will launch the server without the
+configuration window and read configuration from CLI arguments.
 
 Run the following commands in a terminal to start the server for the desired manipulator platform without the startup
-window:
+window (replace `ephys_link.exe` with the actual name of the executable you downloaded):
 
-| Manipulator Platform                 | Command                                     |
-|--------------------------------------|---------------------------------------------|
-| Sensapex uMp-4                       | `ephys-link.exe -b`                         |
-| Sensapex uMp-3                       | `ephys-link.exe -b -t ump3`                 |
-| New Scale                            | `ephys-link.exe -b -t new_scale`            |
-| New Scale via Pathfinder HTTP server | `ephys-link.exe -b -t new_scale_pathfinder` |
+| Manipulator Platform                     | Command                                     |
+|------------------------------------------|---------------------------------------------|
+| Sensapex uMp-4                           | `ephys_link.exe -b`                         |
+| Sensapex uMp-3                           | `ephys_link.exe -b -t ump3`                 |
+| New Scale Pathfinder MPM Control v2.8.8+ | `ephys_link.exe -b -t new_scale_pathfinder` |
+| New Scale M3-USB-3:1-EP                  | `ephys_link.exe -b -t new_scale`            |
 
-More options can be viewed by running `ephys-link.exe -h`.
+More options can be viewed by running `ephys_link.exe -h`.
 
-### "New Scale" vs "New Scale via Pathfinder HTTP server"
+### "New Scale Pathfinder MPM Control" vs "New Scale M3-USB-3:1-EP"
 
-New Scale manipulators have two methods of connection. The first method is through a direct hardware
-connection (`-t new_scale`) and the second is via the HTTP server broadcast by the Pathfinder
-software (`-t new_scale_pathfinder`). The latter method is only available if Pathfinder is running on the same computer
-as Ephys Link. New Scale manipulators should be connected to the Pathfinder software first and the HTTP server should be
-running.
+New Scale manipulators have two methods of connection. The first method is through the Pathfinder MPM Control software (`-t new_scale_pathfinder`) and the second is via a direct hardware
+connection (`-t new_scale`). The first method is only available if Pathfinder is running on the same computer
+as Ephys Link. New Scale manipulators should be connected to the Pathfinder software first and the Pathfinder HTTP server should be running.
 
 **Note:** Currently (July 2023), Ephys Copilot automation and manual control within Pinpoint is not supported when
-connected to New Scale via Pathfinder HTTP server Pinpoint is not supported. Only positional data can be queried.
+connected to New Scale via Pathfinder MPM.
 
 ### Options
 
@@ -131,6 +138,7 @@ All options can be viewed with `ephys_link --help`.
 | Option                           | Input                                               | Default     | Description                                                    |
 |----------------------------------|-----------------------------------------------------|-------------|----------------------------------------------------------------|
 | `-h, --help`                     |                                                     |             | Show help message and options                                  |
+| `-b, --background`               |                                                     |             | Launch server without startup window                           |
 | `-t TYPE, --type TYPE`           | `sensapex` or `new_scale` or `new_scale_pathfinder` | `sensapex`  | Select manipulator type                                        |
 | `-p PORT, --port PORT`           | Valid HTTP port number                              | `8081`      | HTTP port to serve on                                          |
 | `--pathfinder_port`              | Valid HTTP port number                              | `8080`      | HTTP port Pathfinder's server is running on                    |