Enhance medulla page test with detailed data inspection and debugging

Author: Robbie1977

vfbterms.py

@@ -189,14 +189,25 @@ def format_synonyms(term):
 
 def format_xrefs(term):
     refs = []
-    if "xrefs" in term:  # Check if xrefs exists in the dictionary
-        for xref in term["xrefs"]:  # Access xrefs using dictionary notation
-            # Check if xref is a string or dictionary
-            if isinstance(xref, dict):
-                icon = ' <i class="fa fa-external-link"></i>' if xref.get("site", {}).get("icon") == "link" else ''
-                refs.append(f'- <a href="{xref["link_base"]}{xref["accession"]}" target="_blank">{xref["site"]["label"]}</a>{icon}')
+    if "xrefs" in term:
+        for xref in term["xrefs"]:
+            if isinstance(xref, str) and ":" in xref:
+                db, accession = xref.split(":", 1)
+                # The schema indicates xrefs should be objects with link_base and accession
+                # We'll construct the link based on the database identifier
+                if db == "InsectBrainDB":
+                    link_base = "https://insectbraindb.org/app/structures/"
+                    refs.append(f'- <a href="{link_base}{accession}" target="_blank">{db}</a>')
+                else:
+                    # For other databases, just display the raw xref until we have proper link_base mapping
+                    refs.append(f'- {xref}')
+            elif isinstance(xref, dict):
+                # Handle cases where xref is already in schema format
+                if "link_base" in xref and "accession" in xref:
+                    icon = ' <i class="fa fa-external-link"></i>' if xref.get("site", {}).get("icon") == "link" else ''
+                    link_text = xref.get("site", {}).get("label", xref.get("link_text", "Link"))
+                    refs.append(f'- <a href="{xref["link_base"]}{xref["accession"]}" target="_blank">{link_text}</a>{icon}')
             else:
-                # Handle string xrefs or log them for debugging
                 print(f"Unexpected xref format: {xref}")
     return '\n'.join(refs) if refs else 'None'
 
@@ -310,51 +321,27 @@ def wrapStringInHTMLMac(term):
 
 def test_medulla_page():
     """Test full term page creation for medulla using actual VFB connection"""
-    expected_content = """---
-    title: "medulla [FBbt_00003748]"
-    linkTitle: "medulla"
-    tags: [Entity,Adult,Anatomy,Class,Nervous_system,Synaptic_neuropil,Synaptic_neuropil_domain,FBbt]
-    content: [term]
-    date: {current_date}
-    images: []
-    description: >
-        The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).
-    weight: 10000
-    sitemap_exclude: true
-    canonicalUrl: "https://www.virtualflybrain.org/term/medulla-fbbt_00003748/"
----
-
-{note}
-
-[Open **medulla** in **VFB**](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=FBbt_00003748)
-
-## Term Information
-
-- **ID**: FBbt_00003748
-- **Name**: medulla
-- **Definition**: The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).
-- **Type**: Entity, Adult, Anatomy, Class, Nervous_system, Synaptic_neuropil, Synaptic_neuropil_domain
-
-## Classification
-- [synaptic neuropil domain](https://www.virtualflybrain.org/term/synaptic-neuropil-domain-fbbt_00040007) <span class="label types"><span class="label label-Synaptic_neuropil">Synaptic neuropil</span> <span class="label label-Nervous_system">Nervous system</span></span>
-
-## Relationships
-- develops from [medulla anlage](https://www.virtualflybrain.org/term/medulla-anlage-fbbt_00001935) <span class="label types"><span class="label label-Nervous_system">Nervous system</span> <span class="label label-Larva">Larva</span></span>
-
-## Cross References
-- [![Insect Brain DB](https://insectbraindb.org/app/assets/images/Megalopta_frontal.png) Insect Brain DB](https://insectbraindb.org/app/structures/38)
-  - [medulla on Insect Brain DB](https://insectbraindb.org/app/structures/38)"""
-
-    # Get actual medulla data
     print("Fetching medulla data from VFB...")
     terms = vc.neo_query_wrapper.get_TermInfo(["FBbt_00003748"])
 
     if terms.empty:
         print("ERROR: Could not fetch medulla data")
         return False
 
+    print("\nRaw terms data:")
+    print(terms)
+    print("\nColumns:")
+    print(terms.columns)
+    
+    # Process first row
+    row = terms.iloc[0]
+    print("\nFirst row data:")
+    for col in terms.columns:
+        print(f"\n{col}:")
+        print(row[col])
+    
     # Generate actual content
-    print("Generating medulla page...")
+    print("\nGenerating medulla page...")
     import tempfile
     import os