Data Issue - BANC neuron skeletons are incorrect

[admclachlan]

Example: VFB_00106exl (but all of the neurons I tested are like this)

The skeletons do not correctly follow the meshes, they jump between different parts of it. is this a known issue? (looking into this) This will be problematic for NBLAST using these skeletons.

[jefferis]

I would ask Alex Bates. Do you think the node ordering is wrong / not meeting expectations of your swc reader?

[admclachlan]

Can just use skeletor through navis:

@Robbie1977 if we do that we can use the aligned meshes to make the skeletons.
@jefferis Looks like it was just our code for extracting skeletons from meshes that had a bug, I'll get this fixed.

[admclachlan]

Before/After

We've set up a Jenkins job to replace these one at a time:
https://jenkins.virtualflybrain.org/view/ImageAlignmentProcessing/job/Recreate%20BANC%20skeletons%20from%20OBJ/3/console
Can close this once it's done.

[admclachlan]

65083 Brain neurons fixed, log:
https://jenkins.virtualflybrain.org/view/ImageAlignmentProcessing/job/Recreate%20BANC%20skeletons%20from%20OBJ%20Brain/3/
23957 vnc neurons fixed log:
https://jenkins.virtualflybrain.org/view/ImageAlignmentProcessing/job/Recreate%20BANC%20skeletons%20from%20OBJ%20VNC/