diff --git a/R/converters.R b/R/converters.R index 06df7c8..af9bb3a 100644 --- a/R/converters.R +++ b/R/converters.R @@ -187,7 +187,7 @@ OpenMStoMSstatsTMTFormat = function( #' PDtoMSstatsTMTFormat <- function( input, annotation, which.proteinid = 'Protein.Accessions', - useNumProteinsColumn = TRUE, useUniquePeptide = TRUE, + useNumProteinsColumn = FALSE, useUniquePeptide = TRUE, rmPSM_withfewMea_withinRun = TRUE, rmProtein_with1Feature = FALSE, summaryforMultipleRows = sum, use_log_file = TRUE, append = FALSE, verbose = TRUE, log_file_path = NULL, ...