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string confusion
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bioproject/{{ cookiecutter.project_slug }}/scripts/workflow_functions.py

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Original file line numberDiff line numberDiff line change
@@ -145,7 +145,7 @@ def runSmk(smk, configfile, wdir, profile):
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'snakemake',
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'-s', smk,
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'--configfile', configfile,
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'--config', f'external_data={Path(__file__).resolve().parents[1] / 'conf' / 'external_data'}',
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'--config', f'external_data={Path(__file__).resolve().parents[1] / "conf" / "external_data"}',
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'--profile', profile,
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'-d', wdir
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])

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