Adding env for basic recons + astra

Author: Cabana-HPC1

envs/basic.yml

@@ -0,0 +1,199 @@
+name: astra_v1
+channels:
+  - conda-forge
+  - astra-toolbox
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1=main
+  - _openmp_mutex=4.5=1_gnu
+  - astra-toolbox=1.8=np111py36_1
+  - blas=1.0=mkl
+  - bzip2=1.0.8=h7f98852_4
+  - c-ares=1.17.1=h7f98852_1
+  - ca-certificates=2021.7.5=h06a4308_1
+  - cairo=1.16.0=h18b612c_1001
+  - certifi=2021.5.30=py36h06a4308_0
+  - cloudpickle=1.6.0=py_0
+  - curl=7.77.0=hea6ffbf_0
+  - cycler=0.10.0=py_2
+  - cytoolz=0.11.0=py36h8f6f2f9_3
+  - dask-core=2021.3.0=pyhd8ed1ab_0
+  - decorator=5.0.9=pyhd8ed1ab_0
+  - dxchange=0.1.5=py_1001
+  - dxfile=0.5=py_1
+  - edffile=5.0.0=pyh24bf2e0_1000
+  - ffmpeg=4.0=hcdf2ecd_0
+  - fontconfig=2.13.1=hba837de_1005
+  - freeglut=3.2.1=h9c3ff4c_2
+  - freetype=2.10.4=h0708190_1
+  - gettext=0.19.8.1=h0b5b191_1005
+  - glib=2.68.3=h9c3ff4c_0
+  - glib-tools=2.68.3=h9c3ff4c_0
+  - graphite2=1.3.13=h58526e2_1001
+  - h5py=2.8.0=py36h3010b51_1003
+  - harfbuzz=1.8.8=hffaf4a1_0
+  - hdf4=4.2.15=h10796ff_3
+  - hdf5=1.10.2=hc401514_3
+  - icu=58.2=hf484d3e_1000
+  - imageio=2.9.0=py_0
+  - intel-openmp=2021.3.0=h06a4308_3350
+  - jasper=2.0.14=ha77e612_2
+  - jbig=2.1=h7f98852_2003
+  - jpeg=9d=h36c2ea0_0
+  - kiwisolver=1.3.1=py36h605e78d_1
+  - krb5=1.19.1=hcc1bbae_0
+  - lcms2=2.12=hddcbb42_0
+  - ld_impl_linux-64=2.35.1=h7274673_9
+  - lerc=2.2.1=h9c3ff4c_0
+  - libastra=1.8=0
+  - libcurl=7.77.0=h2574ce0_0
+  - libdeflate=1.7=h7f98852_5
+  - libedit=3.1.20191231=he28a2e2_2
+  - libev=4.33=h516909a_1
+  - libffi=3.3=he6710b0_2
+  - libgcc-ng=9.3.0=h5101ec6_17
+  - libgfortran=3.0.0=1
+  - libgfortran-ng=7.5.0=ha8ba4b0_17
+  - libgfortran4=7.5.0=ha8ba4b0_17
+  - libglib=2.68.3=h3e27bee_0
+  - libglu=9.0.0=he1b5a44_1001
+  - libgomp=9.3.0=h5101ec6_17
+  - libiconv=1.16=h516909a_0
+  - libnetcdf=4.6.1=h628ed10_200
+  - libnghttp2=1.43.0=h812cca2_0
+  - libopencv=3.4.2=hb342d67_1
+  - libopus=1.3.1=h7f98852_1
+  - libpng=1.6.37=h21135ba_2
+  - libssh2=1.9.0=ha56f1ee_6
+  - libstdcxx-ng=9.3.0=hd4cf53a_17
+  - libtiff=4.3.0=hf544144_1
+  - libuuid=2.32.1=h7f98852_1000
+  - libvpx=1.7.0=h439df22_0
+  - libwebp-base=1.2.0=h7f98852_2
+  - libxcb=1.13=h7f98852_1003
+  - libxml2=2.9.12=h03d6c58_0
+  - lz4-c=1.9.3=h9c3ff4c_0
+  - matplotlib-base=3.1.0=py36h5f35d83_0
+  - mkl=2020.2=256
+  - mkl-service=2.3.0=py36he8ac12f_0
+  - mkl_fft=1.0.10=py36_0
+  - ncurses=6.2=he6710b0_1
+  - netcdf4=1.3.1=py36h62672b6_4
+  - networkx=2.5=py_0
+  - numexpr=2.6.9=py36h637b7d7_1000
+  - olefile=0.46=pyh9f0ad1d_1
+  - opencv=3.4.2=py36h6fd60c2_1
+  - openjpeg=2.4.0=hb52868f_1
+  - openssl=1.1.1k=h27cfd23_0
+  - pcre=8.45=h9c3ff4c_0
+  - pillow=8.3.1=py36h676a545_0
+  - pip=21.1.3=py36h06a4308_0
+  - pixman=0.38.0=h516909a_1003
+  - pthread-stubs=0.4=h36c2ea0_1001
+  - py-opencv=3.4.2=py36hb342d67_1
+  - pyparsing=2.4.7=pyh9f0ad1d_0
+  - python=3.6.13=h12debd9_1
+  - python-dateutil=2.8.2=pyhd8ed1ab_0
+  - python_abi=3.6=2_cp36m
+  - pywavelets=1.0.3=py36hd352d35_1
+  - pyyaml=5.4.1=py36h8f6f2f9_0
+  - readline=8.1=h27cfd23_0
+  - scikit-image=0.15.0=py36he1b5a44_0
+  - scipy=1.3.2=py36h7c811a0_0
+  - setuptools=52.0.0=py36h06a4308_0
+  - six=1.16.0=pyhd3eb1b0_0
+  - spefile=1.6.1=pyhd3deb0d_0
+  - sqlite=3.36.0=hc218d9a_0
+  - tifffile=0.15.1=py36h3010b51_1001
+  - tk=8.6.10=hbc83047_0
+  - tomopy=1.2.1=py36h470a237_1
+  - toolz=0.11.1=py_0
+  - tornado=6.1=py36h8f6f2f9_1
+  - wheel=0.36.2=pyhd3eb1b0_0
+  - xorg-fixesproto=5.0=h7f98852_1002
+  - xorg-inputproto=2.3.2=h7f98852_1002
+  - xorg-kbproto=1.0.7=h7f98852_1002
+  - xorg-libice=1.0.10=h7f98852_0
+  - xorg-libsm=1.2.3=hd9c2040_1000
+  - xorg-libx11=1.7.2=h7f98852_0
+  - xorg-libxau=1.0.9=h7f98852_0
+  - xorg-libxdmcp=1.1.3=h7f98852_0
+  - xorg-libxext=1.3.4=h7f98852_1
+  - xorg-libxfixes=5.0.3=h7f98852_1004
+  - xorg-libxi=1.7.10=h7f98852_0
+  - xorg-libxrender=0.9.10=h7f98852_1003
+  - xorg-renderproto=0.11.1=h7f98852_1002
+  - xorg-xextproto=7.3.0=h7f98852_1002
+  - xorg-xproto=7.0.31=h7f98852_1007
+  - xz=5.2.5=h7b6447c_0
+  - yaml=0.2.5=h516909a_0
+  - zlib=1.2.11=h7b6447c_3
+  - zstd=1.5.0=ha95c52a_0
+  - pip:
+    - argon2-cffi==20.1.0
+    - async-generator==1.10
+    - attrs==21.2.0
+    - backcall==0.2.0
+    - bleach==3.3.1
+    - cffi==1.14.6
+    - colorcet==2.0.6
+    - defusedxml==0.7.1
+    - entrypoints==0.3
+    - importlib-metadata==4.6.1
+    - ipydatawidgets==4.2.0
+    - ipykernel==5.5.5
+    - ipympl==0.7.0
+    - ipython==7.16.1
+    - ipython-genutils==0.2.0
+    - ipywidgets==7.6.3
+    - itk==5.2.0.post3
+    - itk-core==5.2.0.post3
+    - itk-filtering==5.2.0.post3
+    - itk-io==5.2.0.post3
+    - itk-meshtopolydata==0.7.1
+    - itk-numerics==5.2.0.post3
+    - itk-registration==5.2.0.post3
+    - itk-segmentation==5.2.0.post3
+    - itkwidgets==0.32.1
+    - jedi==0.18.0
+    - jinja2==3.0.1
+    - jsonschema==3.2.0
+    - jupyter-client==6.1.12
+    - jupyter-core==4.7.1
+    - jupyterlab-pygments==0.1.2
+    - jupyterlab-widgets==1.0.0
+    - markupsafe==2.0.1
+    - mistune==0.8.4
+    - nbclient==0.5.3
+    - nbconvert==6.0.7
+    - nbformat==5.1.3
+    - nest-asyncio==1.5.1
+    - notebook==6.4.0
+    - numpy==1.16.0
+    - packaging==21.0
+    - pandocfilters==1.4.3
+    - param==1.11.1
+    - parso==0.8.2
+    - pexpect==4.8.0
+    - pickleshare==0.7.5
+    - prometheus-client==0.11.0
+    - prompt-toolkit==3.0.19
+    - ptyprocess==0.7.0
+    - pycparser==2.20
+    - pyct==0.4.8
+    - pygments==2.9.0
+    - pyrsistent==0.18.0
+    - pyzmq==22.1.0
+    - send2trash==1.7.1
+    - terminado==0.10.1
+    - testpath==0.5.0
+    - tqdm==4.61.2
+    - traitlets==4.3.3
+    - traittypes==0.2.1
+    - typing-extensions==3.10.0.0
+    - wcwidth==0.2.5
+    - webencodings==0.5.1
+    - widgetsnbextension==3.5.1
+    - zipp==3.5.0
+    - zstandard==0.15.2
+prefix: /home/cabana-hpc1/anaconda3/envs/astra_v1